Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03240 ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCTTCTCATCATCATCCAATAAATTCCAACAATAATAATGCAAACAACACAAGCTGTCTCTTCCTTCCTATCCCTAATTCCACTACTAATAATAATAATAATAATCACTACACCAACAACAATAACAACAACTCTTCTATCATGCTTCAAAATAATCACCACACCACACAAACCACTCCTGGATTAGGCTACTATTTCATGGACAACAACAACAACAATGGAGGATCCTCTTCTTCTTCCTCTTCTGCTGTTAAAGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAATTGTCAAAAGGTTGGAGCACCAGGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGTGAGAATGGGTGATGATGCAGTTGGATCAGGTTGCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAATATGAACAAGAACTCTCCAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAACCTCACTGTTTCTTCTTCTTCAGATAATATTGCTTGTAATGAAGGTGGAGATAGGAACGGATCATCGGAAGAAGACCAGGTTGATCTATACAACAACATGATAGATCCTCAGGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAGTACAGTGGATATTTGGGGAGTCTGAAGCAGGAATTCATGAAGAAAAGGAAAAAAGGAAAACTTCCAAAAGAAGCAAGGCAGCAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTGGCATTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGAAAACGCCACTGGAAGCCTTCAGAGGATATGCAGTTTGTGGTCATGGATCCAACCCATCCTCATTATTATATGGATAATGTTCTCTCCAATTCATTTCCCATGGATCTATCTAACACAATGCTCTAA 1128 0.4025 MEGSSNGSSSYVMGAFGENSGGLCPPMMMMPLVTSSHHHPINSNNNNANNTSCLFLPIPNSTTNNNNNNHYTNNNNNNSSIMLQNNHHTTQTTPGLGYYFMDNNNNNGGSSSSSSSAVKAKIMAHPHYHRLLEAYINCQKVGAPGEVVARLEEACASAVRMGDDAVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIACNEGGDRNGSSEEDQVDLYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPTHPHYYMDNVLSNSFPMDLSNTML 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03240 375 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Vivi4g03240 375 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Vivi4g03240 375 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 346 - -
Vivi4g03240 375 Pfam KNOX1 domain 117 156 IPR005540 GO:0003677|GO:0005634
Vivi4g03240 375 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Vivi4g03240 375 Pfam ELK domain 257 278 IPR005539 GO:0003677
Vivi4g03240 375 SUPERFAMILY Homeodomain-like 279 355 IPR009057 -
Vivi4g03240 375 SMART ELK_2 257 278 IPR005539 GO:0003677
Vivi4g03240 375 FunFam Homeobox protein knotted-1-like 2 282 344 - -
Vivi4g03240 375 ProSiteProfiles 'Homeobox' domain profile. 277 340 IPR001356 GO:0003677
Vivi4g03240 375 CDD homeodomain 289 341 IPR001356 GO:0003677
Vivi4g03240 375 Gene3D - 282 344 - -
Vivi4g03240 375 Pfam KNOX2 domain 170 217 IPR005541 GO:0003677|GO:0005634
Vivi4g03240 375 ProSitePatterns 'Homeobox' domain signature. 315 338 IPR017970 GO:0000981|GO:0006355
Vivi4g03240 375 ProSiteProfiles ELK domain profile. 257 277 IPR005539 GO:0003677
Vivi4g03240 375 SMART HOX_1 279 344 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03240 Vivi-Chr4 146719505 146724896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03240 118 375 Homeobox Transcription Factor Family AT1G62360 79.848 6.15e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi4g03240 KNOX2 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03240 - - gmx:100805837 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03240 4 146719505 146724896 Vivi4g03240 4 146719505 146724896 ECH
Vivi4g03240 4 146719505 146724896 Vivi4g03240 4 146719505 146724896 PCT