Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03239 ATGGAGGGTAGTTCTAATGGAAGTTCTTCTTATGTGATGGGTGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCTCCAATGATGATGATGCCTTTAGTCACTTCTTCTCATCATCATCCAATAAATTCCAACAATAATAATGCAAACAACACAAGCTGTCTCTTCCTTCCTATCCCTAATTCCACTACTAATAATAATAATAATAATCACTACACCAACAACAATAACAACAACTCTTCTATCATGCTTCAAAATAATCACCACACCACACAAACCACTCCTGGATTAGGCTACTATTTCATGGACAACAACAACAACAATGGAGGATCCTCTTCTTCTTCCTCTTCTGCTGTTAAAGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGAAGCCTACATCAATTGTCAAAAGGTTGGAGCACCAGGTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGTGAGAATGGGTGATGATGCAGTTGGATCAGGTTGCATAGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTTATCAAATATGAACAAGAACTCTCCAAACCCTTGAAAGAAGCCATGCTTTTTCTTCAAAGGATTGAAGTCCAGTTCAAAAACCTCACTGTTTCTTCTTCTTCAGATAATATTGGTGGAGATAGGAACGGATCATCGGAAGAAGACCAGGTTGATCTATACAACAACATGATAGATCCTCAGGCAGAAGACAGGGAATTAAAGGGTCAGCTTTTGAGAAAGTACAGTGGATATTTGGGGAGTCTGAAGCAGGAATTCATGAAGAAAAGGAAAAAAGGAAAACTTCCAAAAGAAGCAAGGCAGCAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCACAGAAGCTGGCATTAGCAGAGTCAACAGGTCTTGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGAAAACGCCACTGGAAGCCTTCAGAGGATATGCAGTTTGTGGTCATGGATCCAACCCATCCTCATTATTATATGGATAATGTTCTCTCCAATTCATTTCCCATGGATCTATCTAACACAATGCTCTAA 1116 0.4032 MEGSSNGSSSYVMGAFGENSGGLCPPMMMMPLVTSSHHHPINSNNNNANNTSCLFLPIPNSTTNNNNNNHYTNNNNNNSSIMLQNNHHTTQTTPGLGYYFMDNNNNNGGSSSSSSSAVKAKIMAHPHYHRLLEAYINCQKVGAPGEVVARLEEACASAVRMGDDAVGSGCIGEDPALDQFMEAYCEMLIKYEQELSKPLKEAMLFLQRIEVQFKNLTVSSSSDNIGGDRNGSSEEDQVDLYNNMIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPTHPHYYMDNVLSNSFPMDLSNTML 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03239 371 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Vivi4g03239 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Vivi4g03239 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Vivi4g03239 371 Pfam KNOX1 domain 117 156 IPR005540 GO:0003677|GO:0005634
Vivi4g03239 371 SMART KNOX2_2 167 218 IPR005541 GO:0003677|GO:0005634
Vivi4g03239 371 Pfam KNOX2 domain 170 217 IPR005541 GO:0003677|GO:0005634
Vivi4g03239 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Vivi4g03239 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Vivi4g03239 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Vivi4g03239 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
Vivi4g03239 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Vivi4g03239 371 SUPERFAMILY Homeodomain-like 275 351 IPR009057 -
Vivi4g03239 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Vivi4g03239 371 Gene3D - 278 340 - -
Vivi4g03239 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 63 342 - -
Vivi4g03239 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03239 Vivi-Chr4 146719499 146724896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03239 118 371 Homeobox Transcription Factor Family AT1G62360 79.848 9.68e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi4g03239 KNOX2 3.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03239 - - gmx:100805837 516.538