Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03236 ATGGAGCATTTACTTCGATCAGCTCGAGCTTTCCGTTCGCGTTTCCGTTCACTTCCTTCTCCCCAAACCCTAAATTCTCAATTCTCACACCGCCTTCACTCAAAAGTAGAATCTGTACCAGCACGATCCACCTTCTCTGGTGTTTCGAGTTCGAGAGTTTTGTATGGGGAGTCAGGACGGATGCTGCTTCCTGCTGTTTTGGCTGGTTTGTTTGGAATTGGAATGGTGGAAACTGCTTATGCGGATAAAGGTTATGAAGATGTGCAAGAGATTGCTAAGAAGGAACGAGAGAGAATTCAGGACTTGCTTAGAACTAAGGGAATTCGACAAGGTTCTTGTCCTCAATTCAATGTAGCGGTTAAAGGCCAGAAGGTCAGTATAAAGTTTCAAATTCCTCCTGGCTGTGAAGTTTCACAACTTATTGCAAATCTTACTGCACATCTTGGACTGAAATCTGAAGGCCACGGCGGTGGTTCAGATATGATTTTGCGTGCATGGGACAACACGGTTGCTTGGCAACTTACCCTTACTCATCCATCAAAGCAAAAGCATATTCAACAGAATGAACCGTCTTCAACAGATACAAATGCACATGATAGAGATCTATGTATACTTATATTTCATTCTCTCATTGGCTCAGATAAAATTGAAATTGAATTTATGAAGCAAGGGAACTTGAGTCCCGAAGAGCTTGATGCTTTCATATCTGTTTTACAATTAGCTGGTAACAAGTTGGTAGAAAAAAATCCCCTGGGAAAAAAACCATGGGAAGAGATCGAACAGGCACCATCTGTAGATAAAGCTATTTCTAGTCTTGAGGCCATGGGAGTAAGAACATATGGACTCAATGAACCCATAGGTACATCAAACAATGAAGTATCATGGGACAACATCGCCGGTTACGAGCATCAGAAACGGGTAATAGAAGATACAATACTACTGGCTTTGCACAGTCCTGAAGTATATGATGATATTGCTCGCGGGACTAGGCATAAATTTGAGTCTAACAGGCCTCGAGCCGTGCTGTTTGAAGGTCCACCAGGTACAGGGAAAACCTCTTGTGCCCGCGTTATTGCCAATCAAGCGGGCGTCCCTTTGCTTTATGTTCCACTTGAGGTAGTGATGTCTGAATACTATGGTAAAAGTGAACGCCTTCTAGGGAAAGTGTTTTCACTAGCAAACAGTCTTCCCAATGGTGCTATTATATTTTTGGATGAGATTGATTCTTTAGCTGCTTCTCGTGATGGCGAAATGCATGAAGCTACACGGAGAATATTGTCAGTATTATTGCGGCAGATAGATGGCTTTGAGCAGGATAAGAAAGTGGTTGTCATTGCTGCCACAAATAGAAAGGAAGATCTTGATCCTGCATTAATTAGTCGGTTTGATACTATGATCGCTTTTGGTTTACCTGATCATGGTAACCGTCAGGAAATAGCATCCAAATATGCAAAGCACCTGTCCAAAACCGAACTTGATGAACTTGCACGAGCTACAGAAGAAATGGCTGGAAGAGATATTAGAGATATTTGTCTACAAGCGGAACGATCCTGGGCATCAAAGATTATTCGAGGACAAGTATCTAAAGATAAAGAACAAGCAAACCTTCCACCTTTGCAAGAATATATAGCTTGTGCTACACATAGACGGGAATCACTGCTTAGTGCTGCTGCAAATAGGAAGCCCCAACGTTCTTCCGGCAACAAGATAATAAATGAATAA 1722 0.4216 MEHLLRSARAFRSRFRSLPSPQTLNSQFSHRLHSKVESVPARSTFSGVSSSRVLYGESGRMLLPAVLAGLFGIGMVETAYADKGYEDVQEIAKKERERIQDLLRTKGIRQGSCPQFNVAVKGQKVSIKFQIPPGCEVSQLIANLTAHLGLKSEGHGGGSDMILRAWDNTVAWQLTLTHPSKQKHIQQNEPSSTDTNAHDRDLCILIFHSLIGSDKIEIEFMKQGNLSPEELDAFISVLQLAGNKLVEKNPLGKKPWEEIEQAPSVDKAISSLEAMGVRTYGLNEPIGTSNNEVSWDNIAGYEHQKRVIEDTILLALHSPEVYDDIARGTRHKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPLEVVMSEYYGKSERLLGKVFSLANSLPNGAIIFLDEIDSLAASRDGEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKEDLDPALISRFDTMIAFGLPDHGNRQEIASKYAKHLSKTELDELARATEEMAGRDIRDICLQAERSWASKIIRGQVSKDKEQANLPPLQEYIACATHRRESLLSAAANRKPQRSSGNKIINE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03236 573 Coils Coil 85 105 - -
Vivi4g03236 573 CDD RecA-like_protease 326 468 - -
Vivi4g03236 573 ProSitePatterns AAA-protein family signature. 442 461 IPR003960 GO:0005524|GO:0016887
Vivi4g03236 573 Gene3D - 471 536 - -
Vivi4g03236 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 516 IPR027417 -
Vivi4g03236 573 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 270 516 - -
Vivi4g03236 573 SMART AAA_5 337 472 IPR003593 GO:0016887
Vivi4g03236 573 Gene3D - 290 470 IPR027417 -
Vivi4g03236 573 Pfam ATPase family associated with various cellular activities (AAA) 341 469 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03236 Vivi-Chr4 146562533 146569015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03236 337 537 Calmodulin-binding Proteins AT3G56690 36.842 9.05e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03236 - - gmx:100803362 850.121