Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03230 ATGAGTCAGCTCGGTTTGTTATTGCAGGAGACTCGGGCTGAGTCAAGAACGATTCTCGGTTTGTTAAACGAACAAATGGACGGTGTTGATGGAGTTCCTCGGAGGAGACGTAGCTTCAAGGAACGGTTTGGATTCATCGGGATAGGTTGCTGTGGAGCCACACGTGGATTCCGTTCTTCTTCTTCTTCATCATCATCTCAATTACCTCAGCAACAAATTTCTGATACGGATCCGGTTCAGGATCCGAGCGTCTGCGTTGGCCCGAATCCAACTGCTTCCAGTTCGAGTACAGGTTCGAGTTCGTCTAATATGAATCTTGCGGCGGCGTTAGCGGCGGAGCGACAACTCCGAAGACCGCCGGTGGAAACAAACATCGTCGGAGGGGGTAGGACTTCGGGGACACCGTGGAGAGTGTCGTTGATGAGGCTTTTAGAGGAGACGGAAAATGGTGACACGGTGGCTGAAAAAGCTGTGAGTGAGGTGAAAGTAGGTGGTGTGGCGGGGAATGATTCGGTGTGTTGCGTGTGCATGGGAAGGAATAAAGGCGCGGCGTTTATTCCGTGTGGACACACTTTTTGCAGAGTCTGCTCTAGGGAGCTGTGGCTGAACAGAGGCTCCTGCCCACTTTGTAACCGTTCGATTATTGAGATTCTTGATATTTTCTAG 666 0.509 MSQLGLLLQETRAESRTILGLLNEQMDGVDGVPRRRRSFKERFGFIGIGCCGATRGFRSSSSSSSSQLPQQQISDTDPVQDPSVCVGPNPTASSSSTGSSSSNMNLAAALAAERQLRRPPVETNIVGGGRTSGTPWRVSLMRLLEETENGDTVAEKAVSEVKVGGVAGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSIIEILDIF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03230 221 Pfam Zinc finger, C3HC4 type (RING finger) 170 216 - -
Vivi4g03230 221 MobiDBLite consensus disorder prediction 86 104 - -
Vivi4g03230 221 SUPERFAMILY RING/U-box 167 218 - -
Vivi4g03230 221 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Vivi4g03230 221 MobiDBLite consensus disorder prediction 58 79 - -
Vivi4g03230 221 PANTHER OS01G0917900 PROTEIN 9 221 - -
Vivi4g03230 221 SMART ring_2 173 210 IPR001841 -
Vivi4g03230 221 MobiDBLite consensus disorder prediction 58 104 - -
Vivi4g03230 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 220 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03230 Vivi-Chr4 146337519 146338878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03230 18 221 C3H Transcription Factor Family AT4G22250 50.725 4.01e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03230 - - gmx:100804292 249.98