Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03186 ATGGTTTCTCTTGAAGAATCTCGTTCGAATTCGAATCGTTTTCCTTTACCGAGAATCTATCAGTATCATAATCATTCATCTGTTTCCTCGAAATCGCAGCGGAATATTGGAAGATCGATGCGAACCAGAAGATCTAGTATCTTTGATGAAGATAACAGTAGTTGCACGTTTACCGAGAGATCAACGTGTGTATCGGAGAATTTAACCGATTCTGTCGTCGACCTCCGTCTCGGTGAGCTTGCTTCCCGGAATATTAAATCCGGGAGGTCGTCTACGACTGAACAGGACCTTCTTGATCTTTCACAGGCTTTCAGTGAGTATTCTGCTTGTAGTAGTGATATTTCCGGTGAGCTGCAGCGGTTGGCGACTCTGCCGTCGCCGGAGTGTAATTTGAAGAGTGATAGTGGAGGCGGTGGTGAGGAGGAGGTTGAGGTGGAGCCTTGCATGGGGTTTTTGCAGAGGGAGAATTTCTCGACGGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGCTTTGTGTTGATGGTTTACAGTCGTCGTCGGTGGCTGTGAAACGTTCGGCGGCGGCGAAGCTGAGGTTGCTTGCTAAAAATAGGGCTGATAACAGAGTTCTGATTGGTGAGTCCGGTGCGGTGCCGTTTCTGGTTCCTCTGCTGAGATGTACTGATCCATGGACGCAAGAGCATGCTGTGACCGCGCTTTTGAATCTGTCGCTTCACGAGGATAACAAGAAGGTAATATTCAATGCAGGAGCTGTGAAATCGTTGATTTATGTGTTGAAAACAGGGACAGAAACTTCGAAGCAGAACGCGGCTTGTGCGCTTTTGAGTTTAGCTTTGGTGGAAGAGAATAAGAGCTCAATCGGGGCTTCTGGTGCGATTCCGCCGTTGGTTTCGCTTCTACTGAATGGTTCAAACAGAGGGAAGAAAGACGCTCTGACGACACTGTACAAGCTTTGTTCTGTTAAACAGAACAAAGAGAGAGCAGTGAGTGCTGGTGTGGTGAAGCCGCTTGTGGAGCTGGTGGCTGAGCAAGGGAATGGGATGATGGAGAAAGCAATGGTGGTGTTGAATAGCTTAGCGGGGATTGAAGAAGGGAAGGAAGCGATTGTGGAAGAAGGTGGAATAGCGGCACTTGTGGAAGCCATTGAAGACGGGTCTGTGAAAGGAAAAGAATTTGCTGTTTTAACTCTTCTTCAGCTTTGTGCTGACAATGTTACAAACAGAGGGTTACTTGTTAGAGAGGGTGGAATTCCTCCCCTTGTAGCTCTTTCCCAGAATGGAACTCCTCGAGCTAAGCATAAGGCTGAGACACTCCTTCGATATTTGAGAGAATCAAGACAAGAAGCATCAACTTCAACTTCTTAG 1380 0.4732 MVSLEESRSNSNRFPLPRIYQYHNHSSVSSKSQRNIGRSMRTRRSSIFDEDNSSCTFTERSTCVSENLTDSVVDLRLGELASRNIKSGRSSTTEQDLLDLSQAFSEYSACSSDISGELQRLATLPSPECNLKSDSGGGGEEEVEVEPCMGFLQRENFSTEIIESISPEDLQPTVKLCVDGLQSSSVAVKRSAAAKLRLLAKNRADNRVLIGESGAVPFLVPLLRCTDPWTQEHAVTALLNLSLHEDNKKVIFNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSNRGKKDALTTLYKLCSVKQNKERAVSAGVVKPLVELVAEQGNGMMEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCADNVTNRGLLVREGGIPPLVALSQNGTPRAKHKAETLLRYLRESRQEASTSTS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03186 459 Gene3D - 314 458 IPR011989 -
Vivi4g03186 459 FunFam U-box domain-containing protein 4 313 454 - -
Vivi4g03186 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 214 256 IPR000225 GO:0005515
Vivi4g03186 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 296 338 IPR000225 GO:0005515
Vivi4g03186 459 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
Vivi4g03186 459 FunFam U-box domain-containing protein 4 160 312 - -
Vivi4g03186 459 SUPERFAMILY ARM repeat 170 448 IPR016024 -
Vivi4g03186 459 Gene3D - 154 313 IPR011989 -
Vivi4g03186 459 MobiDBLite consensus disorder prediction 25 45 - -
Vivi4g03186 459 SMART arm_5 244 284 IPR000225 GO:0005515
Vivi4g03186 459 SMART arm_5 409 449 IPR000225 GO:0005515
Vivi4g03186 459 SMART arm_5 367 407 IPR000225 GO:0005515
Vivi4g03186 459 SMART arm_5 203 243 IPR000225 GO:0005515
Vivi4g03186 459 SMART arm_5 285 325 IPR000225 GO:0005515
Vivi4g03186 459 PANTHER U BOX DOMAIN-CONTAINING 125 448 - -
Vivi4g03186 459 Pfam Armadillo/beta-catenin-like repeat 287 325 IPR000225 GO:0005515
Vivi4g03186 459 Pfam Armadillo/beta-catenin-like repeat 205 242 IPR000225 GO:0005515
Vivi4g03186 459 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03186 Vivi-Chr4 144755981 144759606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03186 151 452 U-box Gene Family AT2G23140 49.032 6.83e-86 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03186 - - tpra:123898555 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03186 4 144755981 144759606 Vivi4g03186 4 144755981 144759606 PCT