Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03184 ATGGATCCTGGGAAGCTGTTCATTGGAGGGATTTCCTGGGATACTAATGAAGACCGACTCAGACAGTATTTTCAGAGCTTTGGTGATGTGGTTGAGGCGGTGATTATGAAGGATCGTACGACGGGACGGGCTCGTGGTTTTGGATTTGTTGTTTTTGCTGATCCTGCTGTTGCTGAACGGGTTGTGGTTGAGAAACATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAAGCTGTCCCTAGAGATGATCAGAACGCGTTTAGCAGAAGCAACAGCAGCAGTCACGGGTCGCCGGGTCCTACTCCTATACGCACAAAGAAGATATTTGTTGGAGGTCTAGCATCGACCGTTACCGAGACTGATTTCAAGAATTACTTTGATCAATTTGGAACAATTACTGATGTTGTTGTGATGTACGACCATAACACACAACGGCCTCGAGGTTTTGGATTCATCACATTTGATTCCGAGGAAGCTGTCGAGAAAGTGCTTCATAAAACTTTCCACGAACTTAATGGTAAAATGGTTGAGGTCAAGAGGGCTGTCCCGAAGGAGTTATCTCCCGGTCCAAGTAGAGGCCAGCTAGGTGGATTTAGTTACGGTACTATGAATAGGGTTAGTAGTTTTTCTAATGGTTTCGCACAGGGATATAATCCAAACCTCATTGGAGGACACGGACTTAGAATAGACGGTAGATTGAGCCCTGCTAATGTTGGCCGCAATGGATACACTCTTTTCAGTCCAAGTTATGGGACGGGACTCAACTTTGAGCCACCATTGAATGAAAATGAAAACTTGTCTAACTTTGTCATGGGACGAGCATTGAGCTCTCCCTACAGTGCAAGTCCGAGCCGGTACAATAATGCCATGGGGTATGTTGGTTCAAATGTTGGCAACAATTCAACCATAAGTTCAACAAATCAGAGTTTGTGGAGTAACGGAAATCTTAACTATGCCAATAACCCTGCAAACCCCGACTCTTTCCTAGGTTACGGAAATGAAAGTTCAAGTATCGGTTCTTTTGGTAATATCGGATCACTCTGGAGTACCTCTGTCGGTAATCCTAATCAAGCTGGAACTATTGGGTCTGGATATGGTAAGAGCAATCTTAATTATAGGTTCGGAGATATGATATTAGAGTCAAAAGCCGTAGGTTATGGAAAGAGTAATGAAGGCATTGTTGAATCTGATTCATCATATGCTTTCTCAAATGGCGGCTACGGCGAGGCATACAAAAGTACTTATGACGCTGCGCCATTTTATCAAGACCATACATGGAAATCAACAACTTCTGAACTCGAGGATCCCGGTTCTCTTAGTTTTGGCCTTGAAAATGCTGTTTCGGATTTAATGCGCAAAAGCTCTAGTGGTGGTCACGTTGGAGCTTATGCTGTTGCTAATAGACAATCAAACAGAGGAATTGCTGCTTAG 1431 0.4361 MDPGKLFIGGISWDTNEDRLRQYFQSFGDVVEAVIMKDRTTGRARGFGFVVFADPAVAERVVVEKHVIDGRTVEAKKAVPRDDQNAFSRSNSSSHGSPGPTPIRTKKIFVGGLASTVTETDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVEKVLHKTFHELNGKMVEVKRAVPKELSPGPSRGQLGGFSYGTMNRVSSFSNGFAQGYNPNLIGGHGLRIDGRLSPANVGRNGYTLFSPSYGTGLNFEPPLNENENLSNFVMGRALSSPYSASPSRYNNAMGYVGSNVGNNSTISSTNQSLWSNGNLNYANNPANPDSFLGYGNESSSIGSFGNIGSLWSTSVGNPNQAGTIGSGYGKSNLNYRFGDMILESKAVGYGKSNEGIVESDSSYAFSNGGYGEAYKSTYDAAPFYQDHTWKSTTSELEDPGSLSFGLENAVSDLMRKSSSGGHVGAYAVANRQSNRGIAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03184 476 SMART rrm1_1 5 76 IPR000504 GO:0003723
Vivi4g03184 476 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vivi4g03184 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vivi4g03184 476 Gene3D - 103 189 IPR012677 -
Vivi4g03184 476 MobiDBLite consensus disorder prediction 79 104 - -
Vivi4g03184 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vivi4g03184 476 Gene3D - 3 86 IPR012677 -
Vivi4g03184 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Vivi4g03184 476 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 472 - -
Vivi4g03184 476 FunFam Heterogeneous nuclear ribonucleoprotein 1 3 85 - -
Vivi4g03184 476 CDD RRM2_Hrp1p 107 184 - -
Vivi4g03184 476 CDD RRM1_hnRNPA_hnRNPD_like 6 76 - -
Vivi4g03184 476 SUPERFAMILY RNA-binding domain, RBD 3 99 IPR035979 GO:0003676
Vivi4g03184 476 SUPERFAMILY RNA-binding domain, RBD 98 208 IPR035979 GO:0003676
Vivi4g03184 476 MobiDBLite consensus disorder prediction 84 100 - -
Vivi4g03184 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vivi4g03184 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03184 Vivi-Chr4 144684493 144687794 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03184 6 219 Eukaryotic Initiation Factors Gene Family AT2G36660 28.378 3.13e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03184 K14411 - qsa:O6P43_031333 597.045