Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03164 ATGGGGAATGTGAATGGCAGAGAAGAAGATTTCAACGGCACACTATCGGAAGCTTCATCTGATGATGGAGAAAGAGAGGGAGGTTTTGACAGTGTCAGCGATTCCATGTCTGTGCCTGATGGGGTCGTTGAAAATCCTTTACCTTCTGAGGAAATGGGTCATTCTCCACCTGCTAGCCCTAGAACTACTCAATCTCCGTTAATGTTCTCTCCTCAAGTTCCGGTGGTTCCACTACAAAGACCTGATGAGATGCAGGCTCCGGCCCCTTCCTGGATGCAAACTACTTCAGGGTATGAGGATATGTTTGATGAAATTGGGATTCCGACGATGATTACTTGGAGTTATGGTGGTAAAGAAGTTTCCGTGGAGGGGTCATGGGATAATTGGAAATCAAGAATTCCCTTGCAGAGATCAGGAAAGGACTTCACTATAATGAAGGTGCTGCCATCTGGTGTGTACCAGTTTAGATTTATCGTGGATGGACGATGGAGGCACGCACCTGACTTGCCTTGGGAACAAGATGATGCTGCCAATACCTACAACATTCTCGACTTACAGGATTATGTTCCCGAAGACATTGGAAGCATTTCTAGTTTCGAACCACCTAAATCACCAGATTCTAGTTACAACAACTTACACCTAAGCTCCGAAGATTATGCAAAGGAGCCGCCACTGGTTCCTCCATTCATGCAAATGACTCTTCTTAACGTTCCATCGACAAATATGGAATTCGAACCTCTCGTGTCCAGACCACAGCACGTAATGCTCAATCATCTCTATATGCAGAAAGGAAAGAATAGCCCTTCAGTGGTTGCGCTCGGGACAACTCATCGATTTGTAGCGAAATACGTCACTGTGGTGCTGTACAAGTCTTTGCAGCGGTGA 885 0.4588 MGNVNGREEDFNGTLSEASSDDGEREGGFDSVSDSMSVPDGVVENPLPSEEMGHSPPASPRTTQSPLMFSPQVPVVPLQRPDEMQAPAPSWMQTTSGYEDMFDEIGIPTMITWSYGGKEVSVEGSWDNWKSRIPLQRSGKDFTIMKVLPSGVYQFRFIVDGRWRHAPDLPWEQDDAANTYNILDLQDYVPEDIGSISSFEPPKSPDSSYNNLHLSSEDYAKEPPLVPPFMQMTLLNVPSTNMEFEPLVSRPQHVMLNHLYMQKGKNSPSVVALGTTHRFVAKYVTVVLYKSLQR 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03164 294 SUPERFAMILY AMPKBI-like 189 291 IPR037256 -
Vivi4g03164 294 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 220 290 IPR006828 GO:0005515
Vivi4g03164 294 CDD E_set_AMPKbeta_like_N 108 184 - -
Vivi4g03164 294 SMART AMPKBI_2 202 292 IPR006828 GO:0005515
Vivi4g03164 294 Gene3D - 195 292 - -
Vivi4g03164 294 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 294 IPR043554 -
Vivi4g03164 294 Gene3D Immunoglobulins 102 189 IPR013783 -
Vivi4g03164 294 SUPERFAMILY E set domains 107 192 IPR014756 -
Vivi4g03164 294 MobiDBLite consensus disorder prediction 1 67 - -
Vivi4g03164 294 Pfam Glycogen recognition site of AMP-activated protein kinase 107 186 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03164 Vivi-Chr4 144180118 144183104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03164 117 187 Protein tyrosine phosphatase (PTP) family AT3G01510 36.986 5.54e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03164 K07199 - gmx:100777497 493.426