Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03162 ATGGCAGAATCAGACAACGAGTCAGGGGGAGGAACTCAAACAGGTTGCAAAGAGCAAGACAGGTTTCTTCCAATAGCAAACGTGAGCAGGATCATGAAAAAAGCTTTACCAACAAACGCAAAGATCTCAAAAGAAGCAAAAGAAACACTACAAGAGTGTGTATCAGAGTTCATCAGTTTCATAACAAGTGAAGCATCTGATAAGTGTCTGAAAGAGAAGAGGAAAACGGTCAACGGTGACGATCTTCTTTGGGCTATGACAACACTTGGATTTGAGGATTATGTTGAGCCATTGAAGATTTATTTGCGTCAATATAGGGAGATGGAAGGGGAGAAGATTGCTATGAATGGAAGAAGTTATCAGAGAGATCAAGGGAATGTTGGAGAAGGTGTTGGTGGTGTTTATGGTTATGGCTATGGCTTTTCATCTTCAATGATGGGACATAACATGTATGGATCTGGGAGTGGATCGTCGTATTCGGAGAGGAGTATTAGATAA 498 0.4116 MAESDNESGGGTQTGCKEQDRFLPIANVSRIMKKALPTNAKISKEAKETLQECVSEFISFITSEASDKCLKEKRKTVNGDDLLWAMTTLGFEDYVEPLKIYLRQYREMEGEKIAMNGRSYQRDQGNVGEGVGGVYGYGYGFSSSMMGHNMYGSGSGSSYSERSIR 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03162 165 FunFam Nuclear transcription factor Y subunit B-3 11 131 - -
Vivi4g03162 165 Gene3D Histone, subunit A 11 129 IPR009072 GO:0046982
Vivi4g03162 165 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi4g03162 165 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Vivi4g03162 165 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Vivi4g03162 165 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Vivi4g03162 165 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi4g03162 165 SUPERFAMILY Histone-fold 19 123 IPR009072 GO:0046982
Vivi4g03162 165 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03162 Vivi-Chr4 144125238 144126337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03162 1 118 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.512 2.98e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi4g03162 CBFD_NFYB_HMF 7.2e-27 CL0012