Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03160 ATGGACCTCTTCGCCGCCGACCACGTCGCTCCATTTCCCGACACCGGCGACCTTCTCTTCGCAGCCGGCCTCCTCTCCAACCGCCACAATCCTCAAAAGCTCCGCCCCATCAGGTCCGTCCCTCCTCCTCCTCCTTCTCACCTAGTAAATGCTCAGTCCCCTTCCAACCTTCACCCTCCAGAACCTTCCACTCAGACGCAGGACCCGACTGAATCTGGGTCGGGTCATCCTCCGTTGCATAATAAACAGGAACCCGGTTCGTCTTTGGATGATGAAGATGATGATGACGACGTAGACAATTCATCGGGAAGTACTAAAGAATTTGGCTTGAGAAAGAGAAGGAAAAAGTCGGCGAGAAAGCTTGAAAGTTTTGTAGAAGGTTTGGTTAAGAGGGTGATGGAAAAGCAAGAGCAGATGCATAAGGAATTGGTGGAAATGATAGAGAAGACGGAGAAAGAAAGAACGAAGAGAGAAGACGAATGGAGGCGCGAGGAGATGGAAAGATTTAGGAAAGAAGACGAAGCTAGAGCGCAAGAAAGGTCCCGTAGTTTAGCCTTAATATCGTTCATTCAGAAGCTTTTGGGCCAGGAAATTCAGATTCCTCAACAAGCTATGAACTTATTAGGCCATGAAATTCAGATTTATCAACCAGGAGAAGGAAGCGGAAAAAAAGAAGACAACAACAAAAGAGATTTCAACGGCGATCTGAGCAATAATAGATGGCCGGATGTTGAAGTACAGGCACTCATATCGGTAAGAACTGCGTTGGAACACAGGTTTGGTGGCGGTCTAACGGGAACGAAAGGATCGATATGGGAGGAGATATCAGAAGCATTGCGTGGAAAGGGTTACAATCGATCCGCGAAAAAGTGTAAGGAGAAATGGGAAAACATCAACAAGTACTACAAGAGAACAGTTGGGAGTGGCAAGAAACGGCCTCTAAATAGTAAAACTTGCCCTTACTTTGATGAATTGGATAATCTGTATAGAAATGGGTCCTTCAACAGCCTTGGAAATGCATTGAGCAATGCCAACAATGTTTCCATGAGTGAAGTAAAGGAGCAAGGTGAAATTTGA 1077 0.4615 MDLFAADHVAPFPDTGDLLFAAGLLSNRHNPQKLRPIRSVPPPPPSHLVNAQSPSNLHPPEPSTQTQDPTESGSGHPPLHNKQEPGSSLDDEDDDDDVDNSSGSTKEFGLRKRRKKSARKLESFVEGLVKRVMEKQEQMHKELVEMIEKTEKERTKREDEWRREEMERFRKEDEARAQERSRSLALISFIQKLLGQEIQIPQQAMNLLGHEIQIYQPGEGSGKKEDNNKRDFNGDLSNNRWPDVEVQALISVRTALEHRFGGGLTGTKGSIWEEISEALRGKGYNRSAKKCKEKWENINKYYKRTVGSGKKRPLNSKTCPYFDELDNLYRNGSFNSLGNALSNANNVSMSEVKEQGEI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03160 358 Pfam Myb/SANT-like DNA-binding domain 239 328 IPR044822 -
Vivi4g03160 358 MobiDBLite consensus disorder prediction 50 77 - -
Vivi4g03160 358 MobiDBLite consensus disorder prediction 31 120 - -
Vivi4g03160 358 CDD GT1 239 305 - -
Vivi4g03160 358 SMART sant 237 301 IPR001005 -
Vivi4g03160 358 Gene3D - 241 304 - -
Vivi4g03160 358 ProSiteProfiles Myb-like domain profile. 233 299 IPR001005 -
Vivi4g03160 358 FunFam Trihelix transcription factor GT-2 241 304 - -
Vivi4g03160 358 PANTHER FI21293P1 61 347 - -
Vivi4g03160 358 Coils Coil 133 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03160 Vivi-Chr4 144110353 144112529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03160 112 333 Trihelix Transcription Factor Family AT5G47660 43.421 1.25e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vivi4g03160 Myb_DNA-bind_4 2.4e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03160 - - tpra:123899422 446.047