Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03142 ATGGACTCGAAATCCATTGCTAAAGCTCTCTCGAAACAACATCAGAAAACATCTGAAGTGAAAGACCTCAAGTTTTCTTCACTGTCGCTTCAGAAAACAGGCAAACCTGAGTTAACTGCCACGGAAGATTTATCTAAGCAGAATATTGGGGAGATTTATGAAAGTAAGAAGTTTGGTGTTTCATTCCAAAAGGGTTCGTCTGCAGATTCAGTGAGTAATAAATTTGGTTCTGGTTCTGGTTCTTCCTCATCCGCTCCAGGCAAATCATCTGGAGAAGCGGTTCGTGCTATTAGTGGTAGCACGGGCCCACATGAAAGCTCTGTTGATCAAGAGAGAAAGACCTCAGAATATGGAAGCGTGAAGAGCAGTTCTGTTTCTGCTAAAGCTAGCGATGGTGCCAGTAGTATTGCAAAGACAAGTGGTAGTGCTAAGATTAGTGATCGAGCTGATTTTGTTGAGAGTGGTAAGAGTAGTATATGCAGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACTTGTAGTAGCTTTAGTAGCAGTGTAAACAAGCCTCACAAGGCAAATGACATGAGATGGGAAGCTATCCAAGTGGTTAGAACTAGAGATGGAGCATTGGGTTTAGGCCACTTTAGGCTTCTCAAGAGGTTGGGTTGTGGAGATATTGGCAGTGTTTATCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATGAAGGTGATGGACAAAGGGTCGTTAGCGAGTCGTAAGAAGTTACTTCGTGCTCAGACGGAACGGGAAATTCTTCAGTCACTTGACCACCCGTTTCTCCCAACTTTGTACACTCATTTTGAGACGGAGAAATTTTCGTGCTTGGTGATGGAGTTCTGCCCGGGTGGTGACCTACATACACTTAGACAGAAACAACCAGGGAAGCACTTTCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAAGTCCTACTGGCGATGGAGTACCTCCACATGCTCGGGATTGTATACCGTGATCTTAAGCCAGAAAATGTCCTTGTTAGGGATGATGGGCATATTATGCTCTCTGATTTTGACCTTTCCCTCAGATGTGCTGTTAGTCCAACTCTTGTTAAATCCTCGTCCATAGATTCGGAGCCTTTAAGAAGAAATACTGGTTACTGTGCTCAGCCTGCATGTATCGAGCCGCCATCCTGCATTCAACCATCCTGTGTGGCTCCTACCTCATGTTTTTCGCCCCGACTCTTCTCTAGCAAATCAAAGAAAGACCGAAAGCCCAAAACTGAACTTGGCAATCAAGTAAGTCCTCTACCTGAACTCATTGCAGAGCCCACCGATGCTCGGTCTATGTCCTTTGTTGGAACCCACGAATACTTAGCACCTGAGATAATCAAGGGTGAAGGTCACGGGAGTGCAGTTGATTGGTGGACTTACGGAATCTTTCTATACGAGTTATTGTTTGGCAAAACTCCATTTAAGGGATCCGGAAACCGAGCCACACTGTTTAATGTGGTAGGTCAGCCATTGCGATTTCCAGAAGCACCTGTCGTTAGCTTTGCAGCAAGGGATCTAATAAGGGGTTTGCTTGTCAAAGAACCTCAACACAGATTGGCTTATAAACGAGGTGCAACTGAGATTAAGCAGCATCCCTTTTTCGAAGGCGTGAATTGGGCGTTGATTCGATGTGCTACCCCGCCCGAGATTCCAAAGGCTGTTGAGTTTGAGAAGATACCTTCCCCGGCTGCCTCGTCTGGCGGCGAAAAGGCTCCTGTTAGCCACATGTCAACAACAACAGGTGGTAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1833 0.4512 MDSKSIAKALSKQHQKTSEVKDLKFSSLSLQKTGKPELTATEDLSKQNIGEIYESKKFGVSFQKGSSADSVSNKFGSGSGSSSSAPGKSSGEAVRAISGSTGPHESSVDQERKTSEYGSVKSSSVSAKASDGASSIAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDMRWEAIQVVRTRDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQPGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSSIDSEPLRRNTGYCAQPACIEPPSCIQPSCVAPTSCFSPRLFSSKSKKDRKPKTELGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTYGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKAVEFEKIPSPAASSGGEKAPVSHMSTTTGGNQKGSDNYLEFDFF 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03142 610 FunFam Serine/threonine-protein kinase AGC1-7 441 566 - -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 156 184 - -
Vivi4g03142 610 PANTHER FLIPPASE KINASE 1-RELATED 48 572 - -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 63 139 - -
Vivi4g03142 610 Gene3D Phosphorylase Kinase; domain 1 208 293 - -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 1 21 - -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 117 139 - -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 575 599 - -
Vivi4g03142 610 Pfam Protein kinase domain 445 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03142 610 Pfam Protein kinase domain 211 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03142 610 CDD STKc_phototropin_like 209 566 - -
Vivi4g03142 610 Gene3D Transferase(Phosphotransferase) domain 1 294 361 - -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 63 105 - -
Vivi4g03142 610 FunFam serine/threonine-protein kinase D6PK-like 294 361 - -
Vivi4g03142 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672|GO:0006468
Vivi4g03142 610 SUPERFAMILY Protein kinase-like (PK-like) 184 570 IPR011009 -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 585 599 - -
Vivi4g03142 610 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g03142 610 FunFam Serine/threonine-protein kinase D6PK-like 208 293 - -
Vivi4g03142 610 ProSiteProfiles Protein kinase domain profile. 210 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03142 610 MobiDBLite consensus disorder prediction 157 184 - -
Vivi4g03142 610 Gene3D Transferase(Phosphotransferase) domain 1 442 566 - -
Vivi4g03142 610 SMART serkin_6 210 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03142 Vivi-Chr4 143720464 143724400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03142 111 610 AGC Kinase Gene Family AT5G47750 84.692 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi4g03142 Pkinase 2.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03142 K08286 - gmx:100798088 978.008