Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03101 ATGTATCATCCAAAGAATGTTCCTAATTCGAGTTTAATTGGAAGCAATTCATTAGTTCATGATCAAAACATAGATTGTGGTAGGAGCGCAATGGATGCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTCAAAACAACGTTTGCGCTGGACACATGAGCTACATGAACGATTTGTTGATGCTGTGGCTCAACTTGGTGGGCCCGATCGTGCCACACCCAAAGGTGTTCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGAAATACCGATTAGCAAAATACTTACCTGAATCCTCATCCGATGAAGGGAAAAAAGCCGACAAGAAAGAAACGGGGGATATGCTTTCCAATCTAGATGGTTCATCGGGAATGCAAATTAATGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGTCTACACGAACAATTAGAGGTGCAGAGACAGCTACAGTTAAGGATAGAAGCTCAGGGAAAATATTTGAAAAAGATAATCGAAGAGCAACAGCGACTCAGCGGGGTTCTTTCAGAAGCACCGGGCTCTGGTATTGCAGCACCAACTCCAGGAGATATGTGCCAACAAGAACTAGACAATAAGACTGAACCGGCAACCCCCGACCCAGAAAAAGCTGCTAAAGATCATGCACCAGCAAAGAGTCTTTCAGTCGAATCTTTTTCATCTCACCACGAACCGATGACACCGGATTCCGGTTGCCAAGTCGGCTCTCCTGCTGACAGTCCTAACGGCGAGAGATCAGCTAAAAAGCAACGAGTAAGCGTGGAAGGAGAGTATTCAAATCCAGACATGATGCTTCCACATCAGATACTAGAGTCAAGCTTGCCGTCATACCAGCAACCAACCACTGTTTTCCTTAGCCGAGATCACTTTGATTCTGCCTTAGGTATGCCTACTAGAAATGGCGAGGAGTTGGACAAGCTTGGTGGCCGGAATATGTGA 981 0.4536 MYHPKNVPNSSLIGSNSLVHDQNIDCGRSAMDAGSGGNSLANNSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPESSSDEGKKADKKETGDMLSNLDGSSGMQINEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEAPGSGIAAPTPGDMCQQELDNKTEPATPDPEKAAKDHAPAKSLSVESFSSHHEPMTPDSGCQVGSPADSPNGERSAKKQRVSVEGEYSNPDMMLPHQILESSLPSYQQPTTVFLSRDHFDSALGMPTRNGEELDKLGGRNM 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03101 326 MobiDBLite consensus disorder prediction 184 268 - -
Vivi4g03101 326 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Vivi4g03101 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Vivi4g03101 326 Gene3D - 44 103 - -
Vivi4g03101 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 25 298 IPR044848 GO:0003700
Vivi4g03101 326 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Vivi4g03101 326 MobiDBLite consensus disorder prediction 228 254 - -
Vivi4g03101 326 Pfam MYB-CC type transfactor, LHEQLE motif 132 178 IPR025756 -
Vivi4g03101 326 Coils Coil 135 155 - -
Vivi4g03101 326 MobiDBLite consensus disorder prediction 209 224 - -
Vivi4g03101 326 MobiDBLite consensus disorder prediction 105 129 - -
Vivi4g03101 326 FunFam Myb family transcription factor 44 102 - -
Vivi4g03101 326 MobiDBLite consensus disorder prediction 105 122 - -
Vivi4g03101 326 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03101 Vivi-Chr4 142932867 142936337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03101 80 326 G2-like Transcription Factor Family AT2G01060 62.109 1.68e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi4g03101 Myb_DNA-binding 2.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03101 - - gmx:100786925 526.939