Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03098 ATGGCTCAATATCATTGGGATGGAATGGAGTATGTTGTAGATGATAATGAAATGACAGAGGTGGAAGATGATATGTATTTCCGTGGGAGAGCACTCGGTGAATCTGATTCTGATGAAGATGACGATGATGAATATGACCCTTTGGAAAACAAAATAACAGATACAACTGCAGCTGAAGCTAGGAGGGGAAAGGATATCCAAGGTATACCTTGGGATAGACTGAGTATTAGTCGTGAGAAATATAGACAAACAAGACTAGAGCAGTACAAAAACTATGAAAATATACCACAATCAGGGGAGCTATCAGAGAAGGAATGCAAAGTAACCCATAAAGGGGGAATGTATTATGATTTCTGGCAAAACACGAGATCTGTGAAGTCAACTATACTTCATTTCCAATTGAGAAACTTAGTTTGGTCGACATCTAAACATGATGTATATCTTGTTGCACATTACTCAATTGTTCACTGGTCTTCATTAAGTTCTAAGAGAACTGAAGTTTTGAATGTATCCGGGCATGTTGCTCCATGTGAGAAACATCCAGGAAGCCTCTTGGAGGGTTTTACTCAGACACAAATTAGTACCCTGGCTGTACGAGATAACTTGTTGATTGCTGGAGGTTTTCAAGGAGAGCTTATTTGCAAGTACTTAGATCGACCCGGGGTTAGCTTTTGTTCCCGAACTACATATGAGGACAATGCAATCACAAACGCAGTTGACATTTATGAGCATCCTAGTGGAGCTGTTCATTTCATGGCTTCCAACAATGACGGCGGAATCAGAGACTTTGATATGGAGAAATTTCAGCTTACAAAACACTCATGTTTTCCTTGGCCAGTAAATCATACTTCATTGAGCCCTAATGGGAAACTACTCGCAATTGTTGGAGACAACCCGGAAGGGTTACTGGTGGATTCTCAAACCGGAAAGACTATCGCAACTCTATGCGGACACTTGGATTATTCATTTGCATCTGCATGGCATCCTGATGGTTGCATTTTTGCCACTGGGAACCAAGATAAAACTTGTCGCATTTGGGATGTTCGGAATCTATCAAAGTCTGTTGCTGTTCTCAAGGGAAACCTCGGAGCTATACGCTCAATACGCTTCACATCTGATGGACGGTACATGGCAATGGCTGAGCCGGCCGACTTCGTGCATGTCTATGATGCAAAACAGGGATTTGAAAAGGAGCAACAAATAGACTTTTTTGGAGAGGTCTCAGGTGTATCTTTTAGCCCAGACACAGAATCACTTTTTATTGGCGTTTGGGATCGTACCTATGGAAGTCTCCTTCAGTTCAATCGACGCAGAAACTATATGTATCTTGACTACCTGTAA 1341 0.4161 MAQYHWDGMEYVVDDNEMTEVEDDMYFRGRALGESDSDEDDDDEYDPLENKITDTTAAEARRGKDIQGIPWDRLSISREKYRQTRLEQYKNYENIPQSGELSEKECKVTHKGGMYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVAHYSIVHWSSLSSKRTEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLAVRDNLLIAGGFQGELICKYLDRPGVSFCSRTTYEDNAITNAVDIYEHPSGAVHFMASNNDGGIRDFDMEKFQLTKHSCFPWPVNHTSLSPNGKLLAIVGDNPEGLLVDSQTGKTIATLCGHLDYSFASAWHPDGCIFATGNQDKTCRIWDVRNLSKSVAVLKGNLGAIRSIRFTSDGRYMAMAEPADFVHVYDAKQGFEKEQQIDFFGEVSGVSFSPDTESLFIGVWDRTYGSLLQFNRRRNYMYLDYL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03098 446 Gene3D - 237 442 IPR015943 GO:0005515
Vivi4g03098 446 Pfam WD domain, G-beta repeat 310 347 IPR001680 GO:0005515
Vivi4g03098 446 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 444 - -
Vivi4g03098 446 MobiDBLite consensus disorder prediction 24 51 - -
Vivi4g03098 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Vivi4g03098 446 SMART WD40_4 394 435 IPR001680 GO:0005515
Vivi4g03098 446 SMART WD40_4 308 347 IPR001680 GO:0005515
Vivi4g03098 446 SMART WD40_4 351 390 IPR001680 GO:0005515
Vivi4g03098 446 FunFam WD-40 repeat family protein 228 444 - -
Vivi4g03098 446 SUPERFAMILY WD40 repeat-like 192 427 IPR036322 GO:0005515
Vivi4g03098 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03098 Vivi-Chr4 142790860 142795823 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03098 303 427 Miscellaneous Gene Families AT5G08390 29.600 2.03e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03098 - - gmx:100788712 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03098 4 142790860 142795823 Vivi4g03098 4 142790860 142795823 ECH