Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03067 ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAATCGGCACTCAAAGCTGGAGTTGTCAAGCATGGGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACCTCCAGAGAGAAGTCTAAGGTGGCAATCAAAAGGGTGCATCATCATGGATCAAGACACGATGAAAACTCTCTCGCTGTCGTTCCTGCTAGTCCAAGTGACGATGAAATTGTTGATGTTAAGCCTCTTCAGGTTTCAAGGGATATGCTTCAGATTCCTGGTCCGAAAAGGTCTATTGAAAGATTCAGATTGGATAACCTTATCATGGAAGCTATATCTAGCTTGAATGAGCTTGGTGGTTCTAACAAAACAACAATTGCGTCTTTCATATTGGACCATTATTATCCACCGGCAGACTTCAAAAATCTATTGTCAGCAAAACTGAAGTATCTTGCATCTAGTGGAAAACTGATCAAGGTTAAACGTAGGTATAGGATTGCACCTACCCATTCTGACAGAGGAAGACACCAACCCATGTTATTATTGGAAGGGAGGCAAAAAGGCTCTATGAAATTTGAGATTGATGACAGCAATATGCCTTCACAGTCTGAGATAGATTATGAGTTAGAAAAGCTAAGGTCCATGTCTGCAGAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCGCCATAGCGGAAGCTGAAGAGGCGACAAAGGAGGCAGAGGCTGCAGAGGCAGATGCAGATGTAGCGCAAGCTTTTGCAGATGCTGCAATGAAATCAGTGAAGGTGAAGAAGAGCACCCCAAAGACGACGATCCCTGCTTGA 831 0.4465 MGAPKQKWTSEEESALKAGVVKHGDKWRNLSVMANGWTSREKSKVAIKRVHHHGSRHDENSLAVVPASPSDDEIVDVKPLQVSRDMLQIPGPKRSIERFRLDNLIMEAISSLNELGGSNKTTIASFILDHYYPPADFKNLLSAKLKYLASSGKLIKVKRRYRIAPTHSDRGRHQPMLLLEGRQKGSMKFEIDDSNMPSQSEIDYELEKLRSMSAEEAAAVAARAVAEAEAAIAEAEEATKEAEAAEADADVAQAFADAAMKSVKVKKSTPKTTIPA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03067 276 Coils Coil 218 255 - -
Vivi4g03067 276 Gene3D - 2 53 - -
Vivi4g03067 276 Gene3D - 96 173 IPR036388 -
Vivi4g03067 276 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
Vivi4g03067 276 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 97 165 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi4g03067 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 29 IPR017930 -
Vivi4g03067 276 SMART h15plus2 95 160 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vivi4g03067 276 PANTHER SINGLE MYB HISTONE 4 1 24 IPR044597 GO:0003691
Vivi4g03067 276 SUPERFAMILY "Winged helix" DNA-binding domain 97 170 IPR036390 -
Vivi4g03067 276 Pfam linker histone H1 and H5 family 102 158 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03067 Vivi-Chr4 142259361 142265119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03067 1 232 Single Myb Histone (SMH) Gene Family AT1G49950 50.000 1.69e-61 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03067 K09422 - gmx:100780698 269.24