Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03042 ATGGATGAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGCAAATTAGGCAGAAATTCTTCTGATATTCCTAAACCTTACTTGAAGTCGTTAAATCTTGAGGATGAAAACACATTTCTAGCTGTGGGATGTAACAATCTTGCTTTTCTTCAGTCAAACGGGACAACTGTTGGTGGTTGTGTATCAATTTGCGACAACAACAGTAACAATTTCATGGGAATAGAAATTAGTTTAAATAGTTGTAGTAAGAAGTTTTGTAATTATTGCAAGAAGCGGGGCCATATTATCTCTGATTGTCCCACCCGTCCTCCACGATCAACACAACGTTCGGTGCAAGCATTTTCTGCTAGTACAAGCTCTGCAGTTGGTCCTTCCATCATCAATCCATCTAATGGTGGTGCTCTCCAACCTGAAATAATCCAACAGATGGTACTTTCCGCTCTATCAACCTTGGGAATTCAGGGTAACTACGATTGTAATGGAAGGTATTGTTGTAAGACTTCTTTGCCTTCACATCTTTCAGAGTTTAATGCAACACTCAGAGGTTTAAGCGAACTGAGTAGTGGTGGGTGTGGTTATGCTTTAATTGCAAGTAGTAGTTATTTGTTAAGATTAGATAGTCCAATTATGAGTAATTATGAGACTGAAGAGAAATTGAATGAGTTGAAGAATATGGAATATGCTCCCCAAGACGATGACTATGACTCTCCCTACCCTGATGGAGAATACTATGGCAATCCATACATTGCTGGAGGCTGTAAAGATACAGATACAGTTCCAAAGTACTACTTTCATAAGAATAATCGATGGAACAAGTGGGTCATTGTAGGAATTGCATCAAGTCTCGGATCCATCGGTTTCCTCATCGGTCTACTGTTTTTGTACAAAGTTTTGAAACGAAGAATGATAAAGAAACGCAAGGAAAAATTCTTCAAAAGAAATGGTGGTTTGTTGTTGCAAAAAAGAATATCTTCAGGAGAAGTCAACATTGACAGAACCACTCTATTCACTTTAAGGGATTTAAAGAAAGCAACTGACAATTTCAATAAGGATAGAATTCTTGGAAAGGGAGGCCAAGGCACTGTTTACAAAGGCATGTTGGTGGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTTGAAGGAAAGGTTGAAGAGTTCATAAATGAGTTTGTTATTCTTTCACAAATCAACAATAGAAATGTTGTTAAATTATTGGGGTGTTGTTTGGAGACAGAAATTCCTTTGCTTGTTTATGAATTCATTCCCAATGGCAATCTTTTTGAGTATTTGCATGATCAAAATGAGGACATACCAATGACATGGGACATGCGTTTGAGAATTGCTTGTGAAGTTGGTGGTGCTTTATTTTATTTGCACTCAGTTGCATCTCAACCAATTTATCATAGAGATGTCAAATCAACAAATATACTATTGGATGAAAAGTATAGGGCAAAATTAGCCGACTTTGGAGCATCAAGAATAATTTCAATTGAAGCAACTCACCTTACCACAATGGTTCAAGGTACTTTTGGATACTTAGACCCTGAATATTTTTACACTAGTCAATTTACAGAGAAAAGTGATGTTTACAGCTTTGGAGTAGTCCTTGCTGAACTTTTAACTGGTAAGAAACCAATATCTTCTACAAAAATATCTGGGGAATCACAAAATTTAGCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATGTTGTTTGACATAATGGACAAAAGGGTCACAAAAGGAGGGGAGAAAGAACATATCATTGCAGTTGCAAATCTTGCATATAGATGCTTAGAAATAAATGGAAGAAAACGACCAACTATGAAAGAAGTCACATTAGAATTGGAAGGGATTAGGGGATTCAATAAGAAGCTTAATGCACAGCCAAATGACAAGGAAATTGAGTTTTCTGGAATTGAACAATGCCAACCTTGGGATGGGTTTTCTGCATCAAATTCATTACCAATTATGAGTAGCCAAACACACTCGGAGGTTATGCACATTCTGGCAATAGAATAG 2031 0.3678 MDEPHCYAHKWFEIECKLGRNSSDIPKPYLKSLNLEDENTFLAVGCNNLAFLQSNGTTVGGCVSICDNNSNNFMGIEISLNSCSKKFCNYCKKRGHIISDCPTRPPRSTQRSVQAFSASTSSAVGPSIINPSNGGALQPEIIQQMVLSALSTLGIQGNYDCNGRYCCKTSLPSHLSEFNATLRGLSELSSGGCGYALIASSSYLLRLDSPIMSNYETEEKLNELKNMEYAPQDDDYDSPYPDGEYYGNPYIAGGCKDTDTVPKYYFHKNNRWNKWVIVGIASSLGSIGFLIGLLFLYKVLKRRMIKKRKEKFFKRNGGLLLQKRISSGEVNIDRTTLFTLRDLKKATDNFNKDRILGKGGQGTVYKGMLVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIACEVGGALFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFYTSQFTEKSDVYSFGVVLAELLTGKKPISSTKISGESQNLASYFVQCIEENMLFDIMDKRVTKGGEKEHIIAVANLAYRCLEINGRKRPTMKEVTLELEGIRGFNKKLNAQPNDKEIEFSGIEQCQPWDGFSASNSLPIMSSQTHSEVMHILAIE 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03042 676 FunFam Wall-associated receptor kinase 2 320 423 - -
Vivi4g03042 676 Gene3D Phosphorylase Kinase; domain 1 319 423 - -
Vivi4g03042 676 SMART serkin_6 350 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03042 676 ProSiteProfiles Zinc finger CCHC-type profile. 88 102 IPR001878 GO:0003676|GO:0008270
Vivi4g03042 676 FunFam Wall-associated receptor kinase 2 424 641 - -
Vivi4g03042 676 SUPERFAMILY Protein kinase-like (PK-like) 335 617 IPR011009 -
Vivi4g03042 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vivi4g03042 676 ProSiteProfiles Protein kinase domain profile. 350 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03042 676 SUPERFAMILY Retrovirus zinc finger-like domains 83 109 IPR036875 GO:0003676|GO:0008270
Vivi4g03042 676 Gene3D Transferase(Phosphotransferase) domain 1 424 645 - -
Vivi4g03042 676 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 630 IPR045274 GO:0007166
Vivi4g03042 676 CDD STKc_IRAK 356 622 - -
Vivi4g03042 676 Pfam Protein kinase domain 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03042 676 Gene3D - 79 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03042 Vivi-Chr4 141375149 141382437 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03042 35 623 Receptor kinase-like Gene Family AT1G69730 42.765 3.06e-152 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi4g03042 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03042 - - vvo:131640934 811.216