Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03038 ATGATTCTGCAACTCACAATATTTCACATCATTTCTTTCATAATATCTCCCATATCTCCTCCACTAGCATCAGCACAGGATATATATGGAACCGCAGCACTACATGGTTGTAATTCAATATGTGGAGCGGTCTTAATCCCTTTCCCGTTCGGAATGAATAAACCTCATTGCTATGCACACAAATGGTTTGAAATAGAATGTAAAGTGGACAACAAAACTTCTTCTCCATTTCCTAAGCCTTACATTAAGTTGTTAAATCTTGAGGCAACATATTTTTACGAGCAATCGAGCATGGTTGAGATTATGAATCCAGTTTACCGTTCCGATTGTCATAAAAGCAAAAATAGTGGCAACAGTGACAAAACCGTTACTCTTAAACACAGTCCTTTCAGATTTTCACAGGCTTATAACACGTTTCTAGCTGTGGGATGTAACAATCTTGCTTTTCTACAGTCAAATGGGACAACTGTTGGTGGTTGTGTATCAATTTGTGATGACAATAACAACAGTAACAATTTCAATTTCAGTAGTGACGGTTGTAATGGATGGTATTGTTGTAAGACCTCATTGCCTTCGCGTCTTTCTGAGTTTAACGCAACAGTAAGAGGTTTAAGGGAACAGAGTAATGATGGGTGTGGTTATGCTTTGATTGCAAGTGATTACTGGGTAACATTAGATAGTTCCTATATGAGCACGGATGAGATTGGGAGATTGAATGAATTGAAGTATAAGGAATATGCTCCTGCAGTGCTTGAGTGGGAGATTAAAAATTATATGTTAATAAATTCGACATTTCAACTACCTCCAAATTGTTATGACTCCAACGTTACTTCTTTAAGTAACAGAACCACCGGTCGGCAATGTCAATGCTCCTACCTTGATGAACAACAGTATAGCAATCCCTACGTTGCTGGAGGCTGCCCAGAAGTTGGAAGGTACATTGTTGATAAAAAACAATCCAATAAGTGGGTTATTGTAGGAATTTCATCAAGTTTCGGATCCATTGGTTTCCTCATTGGTATGTGGTTTTTGTACAAAGAAATAAAACGAAGAATGATCAAGAAACGCAAAGAAAAAATCTTCAAAAGAAACGGTGGTTTGTTGTTGCAAAAAAGAATGTCTTCAGGAGAAGTAAATGTTGACAGAACTACTCTATTCACTTTAAAGGATTTAAAGAAAGCCACTGACAATTTCAATAAGGATAGAGTTCTCGGAAAGGGAGGCCAAGGCACCGTTTACAAAGGCATGTTGGTGGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTTGAAGGAAATGTTGAAGAGTTCATCAATGAGTTTGTGATTCTTTCACAAATCAACAATAGAAATATTGTCAAACTATTGGGATGTTGTTTGGAGACAGAAATTCCGTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATCTACACGACCAAAATGAGGACATTCCAATGACATGGGACATGCGTTTGAGAATTGCCACTGAAGTTGGTGGAGCTTTATTTTATTTGCACTCAGTTGCATCTCAACCAATTTATCATAGAGACGTCAAATCAACAAATATACTATTAGATGAAAAGTATAGGGCAAAATTAGCTGATTTTGGTGCATCAAGAATAATTTCAATTGAAGCAACTCACCTTACCACAATGGTTCAAGGTACTTTTGGATACTTAGATCCTGAATATTTTCACACTAGTCAATTTACTGAGAAAAGTGATGTGTACAGCTTTGGAGTAGTTCTCGCTGAACTTTTAACTGGTAAGAAGCCAATATCCTCTGCAGAAAAATCTAAGGAATCACAAAGTTTAGCTTCCTATTTTGTTCAGTGTATGGAGGAGAATATGTTGTTTGACGTAATTGACAAAAGGATCACAGAAGGAGGGGAGAAAGAACATATCATTGTAGTTGCAAATCTTGCATTTAGATGCTTAGAAATGAATGGAAGAAAACGACCAACGATGAAAGAAGTAACATTGGAATTAGAAGGGATCATGGGATTGAATAAGAAGCTTAATGCACAGCAAAATCACGAGGAAATTGAGTTTTCTGGAATTGAACAGTACCAACATTACGATGGGTTTTCTACATCAAATTCATTACCAATTGACAGCAGCCAAACACACTCCACAGACTCGGAGGTTATGCATATTCTTGCATTAGAATAG 2184 0.3686 MILQLTIFHIISFIISPISPPLASAQDIYGTAALHGCNSICGAVLIPFPFGMNKPHCYAHKWFEIECKVDNKTSSPFPKPYIKLLNLEATYFYEQSSMVEIMNPVYRSDCHKSKNSGNSDKTVTLKHSPFRFSQAYNTFLAVGCNNLAFLQSNGTTVGGCVSICDDNNNSNNFNFSSDGCNGWYCCKTSLPSRLSEFNATVRGLREQSNDGCGYALIASDYWVTLDSSYMSTDEIGRLNELKYKEYAPAVLEWEIKNYMLINSTFQLPPNCYDSNVTSLSNRTTGRQCQCSYLDEQQYSNPYVAGGCPEVGRYIVDKKQSNKWVIVGISSSFGSIGFLIGMWFLYKEIKRRMIKKRKEKIFKRNGGLLLQKRMSSGEVNVDRTTLFTLKDLKKATDNFNKDRVLGKGGQGTVYKGMLVDGKIVAVKKFKVEGNVEEFINEFVILSQINNRNIVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDMRLRIATEVGGALFYLHSVASQPIYHRDVKSTNILLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSAEKSKESQSLASYFVQCMEENMLFDVIDKRITEGGEKEHIIVVANLAFRCLEMNGRKRPTMKEVTLELEGIMGLNKKLNAQQNHEEIEFSGIEQYQHYDGFSTSNSLPIDSSQTHSTDSEVMHILALE 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03038 727 Gene3D Transferase(Phosphotransferase) domain 1 472 695 - -
Vivi4g03038 727 ProSiteProfiles Protein kinase domain profile. 398 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03038 727 Gene3D Phosphorylase Kinase; domain 1 365 471 - -
Vivi4g03038 727 FunFam Wall-associated receptor kinase 2 472 689 - -
Vivi4g03038 727 SMART serkin_6 398 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03038 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vivi4g03038 727 FunFam Wall-associated receptor kinase 2 368 471 - -
Vivi4g03038 727 Pfam Protein kinase domain 398 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g03038 727 SUPERFAMILY Protein kinase-like (PK-like) 383 665 IPR011009 -
Vivi4g03038 727 CDD STKc_IRAK 404 670 - -
Vivi4g03038 727 Pfam Wall-associated receptor kinase galacturonan-binding 37 79 IPR025287 GO:0030247
Vivi4g03038 727 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 678 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03038 Vivi-Chr4 141355959 141358727 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03038 33 685 Receptor kinase-like Gene Family AT1G16260 43.881 3.96e-175 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi4g03038 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g03038 - - vvo:131640934 985.326