Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03005 ATGAAGAGAAAACAGGAAGGAAATTGTGCTGTGGGGATAGACCTTGGCACAACGTATTCATGTGTTGCAGTATGGAAAGAACAACACTGTCGAGTTGATATCATTCACAACGATCAAGGCAATAGAACTACTCCTTCTTTTGTTGCTTTCACCGAAAATCAGAGATTGATCGGTGAATCTGCTAAGAATCAGGCTGCTTCCAACCCTCAAAACACCGTCTTTGATGCTAAGAGGTTAATTGGTAGGAAGTTTAGTGATCCTATTGTTCAAGAAGATATTCTTTTATGGCCATTCAAGGTCATTGCTGGTGACAATGACAGACCCATGATTATGGTTAAGTACAAGGATCAAGAAAAGCAACTATATGCCGAAGAAGTATCATCTATGGTACTCACTAAAATGCGAGAGATTGCTGAATCATATTTAGAATCAAACGTTAAGAATGCAGTTGTTACTGTGCCAGCTTATTTTAATGATTCACAAAGAAAAGCCACTGTAGATGCCGGTATTATTGCTGGCCTAAATGTTATGAGAGTAATGAATGAACCCACTGCTGCAGCGGTTGCATATGGCCTTGACAACAGAACTGGTTTTGTTGGAGAACGGAATATTTTAGTGTTTGATCTTGGTGGTGGCACTTTTGATGTGTCTATACTAACTATTAAGGACGGCGTCTTCCAAGTTAAGGCCACCGCCGGAAACACTCACCTCGGAGGAGAGGACTTTGACAACAGAATGGTGAACTACTTTGTACAAGAGTTCAAAAGAAAGAACAAAATTGATATTAGCGGGAATTCAAGAGCTTTGACGATGTTGAGAACGGCTTGTGAGAGGGCAAAAAGGTCACTTTCTTTCCTTGTTACCGCTACTATTGAAGTAGATTCTTTATTTCAAGGCATTGACTTTTCTTCATCAATCAATAGAGCCAAATTTGATGAAATGAATATGGACCTTTTTAATGAGTGTATGAAGATTGTTGAAAGTTGTCTAACGGATGCTAAGATGGACAAGAGCAGGATAGATGATGTTGTTCTTGTTGGCGGGTCTTCTAGGATTCCCAAAGTACAGCAGCTATTACAGGAGTTTTTCAATGGGAAGGAGTTGTGCAAAAGCATTAATCCTGATGAGGCTGTGGCTTATGGGGCAGCTGTTCAGGCTGCATTGTTGAGCGGAGACGTTAAGAATGTTCCAAAATTGGTGCTGCAGGACGTTACACCTTTGTCTCTTGGCACATCAGAAATAGGAGATATCATGAGTGTGGTGATTCCTAGGAACACTTGCATTCCTGTCAAAAATACACGAAAATATGTTACCGTTAAAGATAACGTGTCCAGTTTCTTGATCGAGGTTTATGAGGGTGAGAGAATAAGAGACGTTGACAACAACTTGCTCGGTTCTTTTACTCTTTCCGTTCACACCCCAGCTCCTCGTGGTCACCCTTACGATGTTTGTTTTTCTGTAGATGAAAATGGTATTTTGACGGTGTCTGCTACAGAAAATAGGATGTCAGCTGAAGAAATTAATAAATCGATTAAGGAAGCTGAGAATTACCTTATTGAAGACAAGAAATTCCTTCGGAGGGCCAATGCGGTGAATGCATTGGATGACTATATTTACAAAATGAGAAATGCTTTAATGAAAAAGGATATTGATACAATGCTCTCCTCGGATGAAATTGAGTTTATCCAATATTCAATTTCAGCAACTACAAATTTGATTGATGAGAATAAGCAAAAGGTGGAAATAGATGTTCTGGAGAACCATCTAAAGGGACTTAAGATTACCATGGAAGACACTATAGCTAAGATTGTTTAG 1815 0.395 MKRKQEGNCAVGIDLGTTYSCVAVWKEQHCRVDIIHNDQGNRTTPSFVAFTENQRLIGESAKNQAASNPQNTVFDAKRLIGRKFSDPIVQEDILLWPFKVIAGDNDRPMIMVKYKDQEKQLYAEEVSSMVLTKMREIAESYLESNVKNAVVTVPAYFNDSQRKATVDAGIIAGLNVMRVMNEPTAAAVAYGLDNRTGFVGERNILVFDLGGGTFDVSILTIKDGVFQVKATAGNTHLGGEDFDNRMVNYFVQEFKRKNKIDISGNSRALTMLRTACERAKRSLSFLVTATIEVDSLFQGIDFSSSINRAKFDEMNMDLFNECMKIVESCLTDAKMDKSRIDDVVLVGGSSRIPKVQQLLQEFFNGKELCKSINPDEAVAYGAAVQAALLSGDVKNVPKLVLQDVTPLSLGTSEIGDIMSVVIPRNTCIPVKNTRKYVTVKDNVSSFLIEVYEGERIRDVDNNLLGSFTLSVHTPAPRGHPYDVCFSVDENGILTVSATENRMSAEEINKSIKEAENYLIEDKKFLRRANAVNALDDYIYKMRNALMKKDIDTMLSSDEIEFIQYSISATTNLIDENKQKVEIDVLENHLKGLKITMEDTIAKIV 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03005 604 Gene3D - 11 385 - -
Vivi4g03005 604 Gene3D - 74 129 - -
Vivi4g03005 604 FunFam Heat shock 70 kDa 238 321 - -
Vivi4g03005 604 ProSitePatterns Heat shock hsp70 proteins family signature 1. 13 20 IPR018181 -
Vivi4g03005 604 ProSitePatterns Heat shock hsp70 proteins family signature 2. 206 219 IPR018181 -
Vivi4g03005 604 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 535 IPR029047 -
Vivi4g03005 604 SUPERFAMILY Actin-like ATPase domain 10 193 IPR043129 -
Vivi4g03005 604 ProSitePatterns Heat shock hsp70 proteins family signature 3. 343 357 IPR018181 -
Vivi4g03005 604 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 386 508 IPR029047 -
Vivi4g03005 604 FunFam heat shock 70 kDa protein-like 74 129 - -
Vivi4g03005 604 Gene3D - 509 602 IPR029048 -
Vivi4g03005 604 Pfam Hsp70 protein 10 600 IPR013126 GO:0005524|GO:0140662
Vivi4g03005 604 Gene3D Actin; Chain A, domain 4 238 321 - -
Vivi4g03005 604 SUPERFAMILY Actin-like ATPase domain 201 391 IPR043129 -
Vivi4g03005 604 FunFam Heat shock protein 70 11 199 - -
Vivi4g03005 604 Gene3D - 195 369 - -
Vivi4g03005 604 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 530 602 IPR029048 -
Vivi4g03005 604 PANTHER HEAT SHOCK PROTEIN 70KDA 10 555 IPR013126 GO:0005524|GO:0140662
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 478 494 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 212 222 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 398 417 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 372 392 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 61 69 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 39 51 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 9 22 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 149 169 - -
Vivi4g03005 604 PRINTS 70kDa heat shock protein signature 340 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03005 Vivi-Chr4 140241145 140243178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03005 1 603 Calmodulin-binding Proteins AT3G12580 62.097 0.0 769