Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03004 ATGAAAAGAAAACATGAAGGATGTGCTGTGGGGATAGACCTTGGCACAACATATTCATGTGTTGCAGTATGGCAGGAAGATCATCATCGAGTTGAGATCATTCACAATGATCAAGGCAATAAAATTACACCTTCTTTTGTTGCATTCATAGAAAATCAGAGATTGATCGGTGATGCTGCTAAGAATCAAGCATCTTCCAACCCTCAAAACACCGTCTTTGATGCCAAGAGGTTAATTGGTAGGAAGTTTAGTGATCCTATTGTTCAAGAAGATATTCTTTTATGGCCATTCAAGGTCATTGCTGGTGACAATGACAGACCCATGATTATGGTTAAGTACAAGGATCAAGAAAAGCAACTATATGCCGAAGAAGTATCATCTATGGTACTCACCAAAATGCGAGAGATTGCCGAGACATATTTAGAATCAGAAGTTAAAAATGCAGTTGTTACTGTGCCGGCTTATTTTAATGATTCTCAAGGAAAAGCAACTATTGATGCTGGTCTTATTGCTGGCCTCAATGTTATGAGAGTAATGAATGAACCCACTGCCGCAGCCATTGCATATGGCCTTGACAAGAGAACTGGTTGTGTTGGAGAACGGAATATTTTAGTGTTTGATCTTGGTGGTGGCACTTTTGATGTGTCGATACTAACTATTAAGGACAGCGTCTTCCAAGTTAAGGCCACATCCGGAAACACTCACCTCAGTGGAGAGGACTTTGACAACAGAATGGTGAACTACTTTGTACAAGAGTTCAAAAGAAAGAACAAAGTCGACATTAGTGGCAATTCAAGAGCTTTGACGAGGTTGAGAACTGCTTGTGAGAGGGCAAAAAGGTCACTTTCTTTCCTCGTTACCGCCAAATTTGAGGAAATGAATATGGACCTTTTTAATGATTGTATGAAGATTGTTGAAAGTTGTCTAATGGATGCTAAGATGGACAAGAGCAGGATAGATGATGTTGTCCTTGTTGGTGGATCTTCTAGGATTCCTAAAGTACAACAACTATTACAGGAGTTTTTCAATGGGAAGGAGTTGTGCAAAAGCATTAATCCTGATGAGGCTGCGGCTTACGGGGCAGCTGTTCAGGCTGCGTTGTTGAGTGAAGGAGTTATGACTGTTCCAAAGTTGGTGGTGCAGGATGTTACACCTTTGTCTCTTGGCAAATCTGTAATAGGAGATATCATGAGTGTGGTGATTCCTAGGAACACTTGCGTTCCTGTCAAGAAGACAAAATCATATTATTCAACCGAAGATAACCAAAGGATTCATAACATTAAGGTTTATGAGGGTGAGAGAACAAGAGCCAGTGACAACAATTTGCTTGGTTCTTTTACTCTTTCGGGCATTCCCCCAGCTCCTCGCGGCAGCATTATCTCAAATGTTTGTTTTGGTATTGATGAAAATGGTATTTTGACCGTTTCAGCTAATAATAATGTTTCAGGAGTTTCGAGCATGATTACAATAACCAATCACAGAGATAGATTGTCAAGTGAAGAAATTAAAAAATTAATTCAAGAAGCTGAGAATTACCAAAATGAAGACAAGAAATTCCTAAGGAAGGCCAAAGCGATGAATGCATTGGATTTCTACATTTACAAAATGAGAAATGCCTTAAAGAAAGAGGATATTAATCAAAAGCTCTCCTCTCAAGAAATTGAAATTATCGAATCTACAATTGCTGTGATTACAAATTTGATTGATGAGAATAACCAAGAGGTAGAAATAGATGTTTTGGAAGACCATCTAAAGGGACTTAAGAGTACCATGGAAGACATTTTAGCTAAGACTATTTAG 1800 0.3878 MKRKHEGCAVGIDLGTTYSCVAVWQEDHHRVEIIHNDQGNKITPSFVAFIENQRLIGDAAKNQASSNPQNTVFDAKRLIGRKFSDPIVQEDILLWPFKVIAGDNDRPMIMVKYKDQEKQLYAEEVSSMVLTKMREIAETYLESEVKNAVVTVPAYFNDSQGKATIDAGLIAGLNVMRVMNEPTAAAIAYGLDKRTGCVGERNILVFDLGGGTFDVSILTIKDSVFQVKATSGNTHLSGEDFDNRMVNYFVQEFKRKNKVDISGNSRALTRLRTACERAKRSLSFLVTAKFEEMNMDLFNDCMKIVESCLMDAKMDKSRIDDVVLVGGSSRIPKVQQLLQEFFNGKELCKSINPDEAAAYGAAVQAALLSEGVMTVPKLVVQDVTPLSLGKSVIGDIMSVVIPRNTCVPVKKTKSYYSTEDNQRIHNIKVYEGERTRASDNNLLGSFTLSGIPPAPRGSIISNVCFGIDENGILTVSANNNVSGVSSMITITNHRDRLSSEEIKKLIQEAENYQNEDKKFLRKAKAMNALDFYIYKMRNALKKEDINQKLSSQEIEIIESTIAVITNLIDENNQEVEIDVLEDHLKGLKSTMEDILAKTI 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 319 335 - -
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 8 21 - -
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 38 50 - -
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 60 68 - -
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 458 474 - -
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 148 168 - -
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 377 396 - -
Vivi4g03004 599 PRINTS 70kDa heat shock protein signature 351 371 - -
Vivi4g03004 599 FunFam Molecular chaperone DnaK 238 289 - -
Vivi4g03004 599 Gene3D - 301 351 - -
Vivi4g03004 599 FunFam heat shock 70 kDa protein-like 73 128 - -
Vivi4g03004 599 Pfam Hsp70 protein 288 596 IPR013126 GO:0005524|GO:0140662
Vivi4g03004 599 Pfam Hsp70 protein 9 283 IPR013126 GO:0005524|GO:0140662
Vivi4g03004 599 Gene3D - 194 236 - -
Vivi4g03004 599 FunFam Heat shock protein 70 10 199 - -
Vivi4g03004 599 Gene3D Actin; Chain A, domain 4 237 283 - -
Vivi4g03004 599 SUPERFAMILY Actin-like ATPase domain 200 369 IPR043129 -
Vivi4g03004 599 PANTHER HEAT SHOCK PROTEIN 70KDA 9 548 IPR013126 GO:0005524|GO:0140662
Vivi4g03004 599 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 375 530 IPR029047 -
Vivi4g03004 599 Coils Coil 577 597 - -
Vivi4g03004 599 Gene3D - 73 128 - -
Vivi4g03004 599 Gene3D - 352 366 - -
Vivi4g03004 599 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vivi4g03004 599 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 373 526 IPR029047 -
Vivi4g03004 599 ProSitePatterns Heat shock hsp70 proteins family signature 3. 322 336 IPR018181 -
Vivi4g03004 599 Gene3D - 527 599 IPR029048 -
Vivi4g03004 599 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vivi4g03004 599 Gene3D Actin; Chain A, domain 4 287 300 - -
Vivi4g03004 599 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Vivi4g03004 599 Gene3D - 10 193 - -
Vivi4g03004 599 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 525 598 IPR029048 -
Vivi4g03004 599 Coils Coil 495 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03004 Vivi-Chr4 140220064 140222020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03004 1 597 Calmodulin-binding Proteins AT3G12580 62.945 0.0 773