Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g03003 ATGAAGAGAAAACAGGAAGGAAATTGTGCTGTGGGAATAGACCTTGGCACAACGTATTCATGTGTTGCAGTATGGCAAGAAGAACATCACCGAGTTGAGATCATTCACAATGATCAAGGCAATAGAACTACTCCTTCTTTTGTTGCTTTCACAGAAACTCAGAGATTGATCGGTGATGCTGCTAAGAATCAAGCTGCTGCCAACCCTCAAAACACCGTCTTTGATGCTAAGAGGTTAATCGGTAGAAAGTTTAGTGATCCTACTGTTCAAGATGATATACTTTTATGGCCATTCAAAGTAGTTGCTGGTGTTGACGACAGACCCATGATTATGGTTAATTACAAGGATCTGGAAAAGAAACTATATGCCGAAGAAGTATCATCTATGGTACTCACCAAAATGCGAGAGATTGCTGAGACATATTTAGAATCAAAAGTTAAAAATGCAGTTGTTACTGTGCCAGCTTATTTTAATGATTCTCAAAGAAAAGCAACTATAGATGCCGGTGTTATTGCTGGCCTCAATGTTATGAGGGTAATGAATGAACCTATTGCTGCAGCTGTTGCATATGGCCTTGACAAGAGAACTAACTTTGATGGAGAAAGAAATATTTTAGTCTTCGATCTTGGTGGTGGAACGTTTGATGTGTCTTTACTAACCATTAAGGGTAATGTGTTCAAAGTTAAGGCAACAGCTGGAAACACTCACCTTGGAGGAGAAGACTTTGATAATAGAATGGTGAAATACTTTGTAGAAGAGTTCAACAGAAAGAACAAAGTGGATATTAGTGGAAATCCGAAAGCTTTGAGGAGGTTGAGAACTGCTTGTGAGAGGGCAAAAAGGTCACTTTCTTTCCTCGTTACCGCCACTATTGAAGTAGATTCTTTATTTCAAGGCATTGACTTTTCTTCATCAATCAATAGAGCCAAATTTGAGGAAATGAATATGGACCTTTTTAATGATTGTATGAAGATTGTTGGAAGTTGTCTAATGGATGCTAAGATGGACAAGAGCAGGATAGATGATGTTGTACTTGTTGGCGGGTCTTCTAGGATTCCTAAAGTACAGCAGCTATTACAGGAGTTTTTCAATGGAAAGGAGTTGTGCAAAAGCATTAATCCTGATGAGGCTGTGGCTTACGGAGCAGCTGTTCAGGCTGCTATGTTGAGTGTAGACATTAAGAATGTTCCAAAGTTGGAGCCGCAGAATAATTTACAATTGGTCCTGCACAATGTTCCACAGTTGGTGCTGCAGGATGTTACACCTTTGTCTCTTGGTATATCTGAATTAGGAGATATCATGAATGTGATGATTGCTAGGAACACTTGCATTCCTATCAACCAGACAAAACCATTTGTTACAACTGTAGATAACCAATTCAGTACTTTGTTTAAAGTTTATGAGGGTGAGAGGACAAGAGCCAGTGACAACAATTTGCTTGCTTCTTTTACTTTTTCTGGCATTCCCCCAGGTCCTCGCGGCAGCCATCTCTCAAATGTTTGTTTTGCTATTGATGAAAATGGTATTTTGACTGTTTTAGCTAATAACAATGCTGCTGGAATTTCTAAGGCGATTACAATAACCAATCACAAAGATAGATTGTCAAGTGAGGAAATTAAAAAATTAATTCAAGAAGCTGAGAATTACCAAATTGAAGACAAGAAATTCCTACGGAAGGCCAATACACTAAATGCATTGGATAACTACATTTACAAAATGAGAACTGCTTTAAAGAAAGAGGATATTGATACAAAGCTCTCCTCAGAAGAAATTGAGAAGATCAAATCTACAATCGTGGTTACAACATATTTGGTTGATGAGAGTAACCATGTGGTTGAAATAGATGATTTGGAGCACCATCTAAAGGAGCTTAAAACTAGCATGGAACACATTATTGCCAAGACTATTTAG 1911 0.3815 MKRKQEGNCAVGIDLGTTYSCVAVWQEEHHRVEIIHNDQGNRTTPSFVAFTETQRLIGDAAKNQAAANPQNTVFDAKRLIGRKFSDPTVQDDILLWPFKVVAGVDDRPMIMVNYKDLEKKLYAEEVSSMVLTKMREIAETYLESKVKNAVVTVPAYFNDSQRKATIDAGVIAGLNVMRVMNEPIAAAVAYGLDKRTNFDGERNILVFDLGGGTFDVSLLTIKGNVFKVKATAGNTHLGGEDFDNRMVKYFVEEFNRKNKVDISGNPKALRRLRTACERAKRSLSFLVTATIEVDSLFQGIDFSSSINRAKFEEMNMDLFNDCMKIVGSCLMDAKMDKSRIDDVVLVGGSSRIPKVQQLLQEFFNGKELCKSINPDEAVAYGAAVQAAMLSVDIKNVPKLEPQNNLQLVLHNVPQLVLQDVTPLSLGISELGDIMNVMIARNTCIPINQTKPFVTTVDNQFSTLFKVYEGERTRASDNNLLASFTFSGIPPGPRGSHLSNVCFAIDENGILTVLANNNAAGISKAITITNHKDRLSSEEIKKLIQEAENYQIEDKKFLRKANTLNALDNYIYKMRTALKKEDIDTKLSSEEIEKIKSTIVVTTYLVDESNHVVEIDDLEHHLKELKTSMEHIIAKTI 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g03003 636 Gene3D Actin; Chain A, domain 4 238 321 - -
Vivi4g03003 636 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 410 563 IPR029047 -
Vivi4g03003 636 FunFam Heat shock 70 kDa 238 321 - -
Vivi4g03003 636 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 563 635 IPR029048 -
Vivi4g03003 636 ProSitePatterns Heat shock hsp70 proteins family signature 1. 13 20 IPR018181 -
Vivi4g03003 636 ProSitePatterns Heat shock hsp70 proteins family signature 2. 206 219 IPR018181 -
Vivi4g03003 636 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 61 69 - -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 495 511 - -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 372 392 - -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 9 22 - -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 340 356 - -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 39 51 - -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 212 222 - -
Vivi4g03003 636 PRINTS 70kDa heat shock protein signature 149 169 - -
Vivi4g03003 636 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 411 566 IPR029047 -
Vivi4g03003 636 Gene3D - 195 369 - -
Vivi4g03003 636 ProSitePatterns Heat shock hsp70 proteins family signature 3. 343 357 IPR018181 -
Vivi4g03003 636 SUPERFAMILY Actin-like ATPase domain 10 194 IPR043129 -
Vivi4g03003 636 PANTHER HEAT SHOCK PROTEIN 70KDA 10 590 IPR013126 GO:0005524|GO:0140662
Vivi4g03003 636 FunFam heat shock 70 kDa protein-like 74 129 - -
Vivi4g03003 636 Gene3D - 74 129 - -
Vivi4g03003 636 Gene3D - 11 387 - -
Vivi4g03003 636 Coils Coil 614 634 - -
Vivi4g03003 636 FunFam Heat shock protein 70 11 201 - -
Vivi4g03003 636 Pfam Hsp70 protein 10 634 IPR013126 GO:0005524|GO:0140662
Vivi4g03003 636 Gene3D - 564 636 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g03003 Vivi-Chr4 140156731 140158957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g03003 1 634 Calmodulin-binding Proteins AT3G12580 63.091 0.0 800