Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02983 ATGGCAACAACAGAGACAGCTTCTGCTGCGCTTGGTCCTCGATATGCACCTGATGATCCCACTCTTCCGAAGCCGTGGTTGGGGTTGATTGATGGAGGTACTGGTACTCTGTACTATTGGAATCCTGAAACCAATGTTACTCAATATGATAAACCGGTAGCTTTGGCTCCACCTGTGCCTGCTGCTTCTACGCCTGGTTTGGCGCCTATACCGAGTGGGGCGGGGCAACAGATGATGCAGGTGCAGCCGTCGCAACAACAGCAGGGGAATCATTTTTCTCAACAGCATGGTCAACAGATTCCACAGCAACAGAGTCCTCATGTGGCGCAGGGTGCTCAACAGCAGCCTTCTCAAGCTGCTCAACCTGTGCAGCAGCAGCAGAACTTACAGCTTGCACAGCAGACGCAACAGCCTGGGTTACACCAAGCTAGACCACAGATGATGCAGTATCAAGGACAGCAATTTCAGCAAATGCATCATCAGATGCCTCCGCAGGGGATTCGTCCACAACAATTTGGGCAAGGTAATCCTCAGGAGCATGGTACGCATATTGTGCAACCGCAAGCGCCTCAATTCACTCCTCAGAACATGCATTATATGGGGTATCAACAAAACATGAATGCACCCAGGCAACCTAACTCACAGCAGATTCAGACAAACATGCCCCCGTCTGGGCAACCAACACCCCAGCATAACATACATAACCAGCCTTTTGAAAACCAACAAGATTTTAAACCAGCAATGCCAAAGGTGGAGGAAGCAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCATCCCAGTATCAAAAAAGGAGTGCCTTGCCTGTTCAAAACAACCCGAATGTTCCTGCTGAAATAAGCTCTGGTCAAGTGTCTAATGCAAGTGTAAATTCTGGCCAACCACAACAATTCAGGGGTTTTTCAGGCAGCATGCAGCAGCCTACCCCGACAATGCAATCACAGCAGGGTGGTTCTGATTTATTTTATCAACACGCTCCTAACTTTCAAAATCAGATGAGTCCAGGAATGATGCATGGGCATCCATCTAATGCGCATCCTGCTGCCCAAAAGATGGGACACGAGGATAACGTACACGGTAGAGCTGGAAATGACTATTATTATAATTCTAACAAAGAGATGCCGCCTATGGGTCGTCAGCAGTCAGATATGGCCCAAATGCCAATTTCCAGAAATCAGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAATAAAGTTCCTAGTGGAAATGGAAGTGGTATTACTGGGAATGCTATGGGTAACATATTCACCTCTCCTATTGGAGGACCTCCTGCCCTTTCAAGTAACTCATTTACAAGGCCTCCGTATGGTGGATCTTCGGATGTTGCTGATCTCTCACCAGCTGAAATATACTGTCGGCAACATGAAGTTACAGCATCGGGTGACAACATTCCACCCCCTTTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTATGTTCTGCAGGCTTCTCGAATCCAACGCCAATACAGGCTCAAACATGGCCTATTGCCCTACAGGGTAGAGACATAGTGGCGGTTGCCAAAACAGGCTCTGGGAAAACACTAGGCTACTTGATGCCGGCCTTCATTCTTCTTAGGCAGCGACGCAATAATTCTCTGAATGGCCCCACCGTCTTGGTTTTGGCTCCAACACGTGAACTTGCTACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTACGGTGGAGCACCTAAAGCTCTTCAGCTAAAAGAGTTAGATCGGGGGGCAGACATCGTTGTTGCCACACCTGGTAGGCTCAATGATATACTTGATATGAAAAAAATTGACTTTAGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTTAATGAGATTCCACCACGTAGACAGACTCTCATGTACACTGCAACCTGGCCTAAAGAAGTAAGAAAGATTGCTGGCGATCTTCTTGTTAATCCAGTTCAGGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAACAAATCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGATAAACAGAGGCGTCTAGAGCAGATCCTCAGATCCCAGGAACGAGGTTCTAAGATCATAATATTTTGTTCCACAAAAAAGTTATGTGATCAGCTTGCCCGTAATATTGGCAGAACTTTTGGGGCGGCTGCAATTCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTAGGTCAGTTTCGGAATGGGAAGTCTCCAATTTTGGTTGCCACTGATGTTGCTGCTCGTGGTCTTGATATTAAGGATATAAGGGTTGTGATCAACTTTGATTTCCCCAATGGTGTTGAAGACTATGTACACCGAATTGGAAGAACTGGGCGGGCAGGTGCTACTGGAGTGGCATATACCTTTTTCTCTGAGCAGGATTGGAAACATGCAGGTGATTTGATCAAAGTTTTGGAGGGTGCTAACCAACATGTGCTTCCAGAATTAAGGCAGATTGCTTCCCGCGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGACTCGGTTTGACTCTGGTGGTGGTGGGCGCTGGGAGCCTGGTGGTCGTGGTGGCATGAGGGATGCTGGTGGCTTTGTTCCTCGTGGTGGCATGAGGGACGGTGGTGGCTTTGGTGGAGGCTTTGGTGGTCGAGGTGGCACAAGGGACGGTGGTAGCTTTGGTAGTCGTGGTGGAATGAGGGATGGACCTGGTGGACAAGGTGAGAGAGGCGGTGATTTCTTTCCTGGTAGAGGCAATAGGGGTAGAGGATTTGGTCCTCCACGTGGGGGGCATGTTGGTTGGGGTAGGGGTGACCGTGGTGGTCCTAGTGATCGGTACAACATGGATGGTCGCGGACAAGGGCGTGGACGTGGACGATTTGACAACAGAAGAGATGTTCCAAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGAAAGAGTTCGAACATGGGATATTAACAGAAGCAGCAGTAGAAGTAGAAGTAGGAGTAGGAGCTGGAGCAGGGGTCGCAGTAGAAGCCGCAGCTGGTCTCGAGGTCGCAGTCGCAGCTATAGCCGTAGTCCAAGGCGAAGTCATAGCCGTGACCGAAGCTATAGCCGCAGCCCCAGCCCCAAAAAGAATACTAGGCGTGTTAAGTCTAAATTTTCCGATAAGATTGATATTGTGCCACCTGAAGCAGGAGCTTCTGATCCTAATATGTTCCCTATATCTGCCAACACCCAAGAGAATTCTGTTTTGGGAACAGAACATCTGGAGCAGCTACCTGTTGTTGGAAGCACTGGCCCAGATAATCCAGAGGCTGTTAGTCATCAAGCAGCTTCTGATATTTGA 3441 0.4815 MATTETASAALGPRYAPDDPTLPKPWLGLIDGGTGTLYYWNPETNVTQYDKPVALAPPVPAASTPGLAPIPSGAGQQMMQVQPSQQQQGNHFSQQHGQQIPQQQSPHVAQGAQQQPSQAAQPVQQQQNLQLAQQTQQPGLHQARPQMMQYQGQQFQQMHHQMPPQGIRPQQFGQGNPQEHGTHIVQPQAPQFTPQNMHYMGYQQNMNAPRQPNSQQIQTNMPPSGQPTPQHNIHNQPFENQQDFKPAMPKVEEAEFKNGSQVGFSPSQYQKRSALPVQNNPNVPAEISSGQVSNASVNSGQPQQFRGFSGSMQQPTPTMQSQQGGSDLFYQHAPNFQNQMSPGMMHGHPSNAHPAAQKMGHEDNVHGRAGNDYYYNSNKEMPPMGRQQSDMAQMPISRNQQDMRIGNSPFQNKVPSGNGSGITGNAMGNIFTSPIGGPPALSSNSFTRPPYGGSSDVADLSPAEIYCRQHEVTASGDNIPPPFMTFDSTGFPPEILQEVCSAGFSNPTPIQAQTWPIALQGRDIVAVAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILDMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMDKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARNIGRTFGAAAIHGDKSQGERDWVLGQFRNGKSPILVATDVAARGLDIKDIRVVINFDFPNGVEDYVHRIGRTGRAGATGVAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMTRFDSGGGGRWEPGGRGGMRDAGGFVPRGGMRDGGGFGGGFGGRGGTRDGGSFGSRGGMRDGPGGQGERGGDFFPGRGNRGRGFGPPRGGHVGWGRGDRGGPSDRYNMDGRGQGRGRGRFDNRRDVPRSRDRSYSRSPERVRTWDINRSSSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSPRRSHSRDRSYSRSPSPKKNTRRVKSKFSDKIDIVPPEAGASDPNMFPISANTQENSVLGTEHLEQLPVVGSTGPDNPEAVSHQAASDI 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02983 1146 FunFam probable ATP-dependent RNA helicase DDX17 450 692 - -
Vivi4g02983 1146 Pfam DEAD/DEAH box helicase 508 678 IPR011545 GO:0003676|GO:0005524
Vivi4g02983 1146 SMART ww_5 21 54 IPR001202 GO:0005515
Vivi4g02983 1146 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Vivi4g02983 1146 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 484 512 IPR014014 GO:0003724
Vivi4g02983 1146 SMART helicmild6 739 823 IPR001650 -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 1058 1072 - -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 1 23 - -
Vivi4g02983 1146 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 443 862 - -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 1031 1057 - -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 341 373 - -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 862 1108 - -
Vivi4g02983 1146 FunFam ATP-dependent RNA helicase RhlB 693 865 - -
Vivi4g02983 1146 SMART ultradead3 503 706 IPR014001 -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 208 241 - -
Vivi4g02983 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 838 IPR027417 -
Vivi4g02983 1146 Pfam Helicase conserved C-terminal domain 715 823 IPR001650 -
Vivi4g02983 1146 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 862 IPR001650 -
Vivi4g02983 1146 SUPERFAMILY WW domain 13 55 IPR036020 GO:0005515
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 1125 1146 - -
Vivi4g02983 1146 CDD SF2_C_DEAD 703 832 - -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 64 150 - -
Vivi4g02983 1146 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 635 643 IPR000629 -
Vivi4g02983 1146 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 515 689 IPR014001 -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 260 279 - -
Vivi4g02983 1146 Gene3D - 694 864 IPR027417 -
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 978 1028 - -
Vivi4g02983 1146 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Vivi4g02983 1146 Gene3D - 460 693 IPR027417 -
Vivi4g02983 1146 CDD WW 35 53 IPR001202 GO:0005515
Vivi4g02983 1146 MobiDBLite consensus disorder prediction 75 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02983 Vivi-Chr4 138712523 138720082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02983 482 843 Eukaryotic Initiation Factors Gene Family AT3G19760 33.609 9.80e-63 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02983 K12823 - gmx:100807830 1298.11