Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02942 ATGGTGTTGGAAACGGAAATCATTTATCAGCAAAGCATTCCTGTGTTGGATGTCAAGTATCACCTTTGCGTTTCTCAAGAAAATGCCGTCAAGGTTGACGTTTCACCTGCTTCCAATGTTGTTCCGGTTTTTAATCAGCTTAGGGTTTCGACTGAATCCATTTCAACCGAAACGTCTCTCTTTGGATCGACTGTGAGTCGCTCTGAGATGAAAACTGATAGTATTATAGAGGAAGCTGTTGCAAAATTTATCCCTGTTGTTCGTTCTGGTAGCTGTGCTGATATTGGACCGAGGGGATCGATGGATGATGATCACATTCAAATAGATGATCTAGCTACCCATCTTGGGTTTGTGTTAAAATCTCCTACAAGGAGTGCTTTTTATGCAGTTTTTGATGGACATGGAGGTCCTGATGCAGCTGTGTTTGTTAAGAACAATGCTATGAAATTATTTTTTGAAGACGCCACAATGCTGCAATCCTATGGCACTGATGCACTTCTAATGAAGAGGTTGGAAGATACTCATCGGAAAGCTTTTCTAGGGGCTGACCTTGCGATGGCTGATGAACAGAGTATTAGTAGTTCTTGTGGGACAACAGCATTGACTGCTCTTATACTTGGAAAGCATTTGCTGGTTGCTAATGCGGGTGATTGTCGAGCTGTTCTTTGTAAGCGCGGTGTAGCTGTTGACATGTCTCACGACCACAGACCAAGTTATTTACCAGAGCGGAAGAGAGTGGAAGAGTTGGGTGGTTATATTGATGATGGATATCTCAATGGTTATCTTTCTGTAACTCGTGCCCTTGGTGACTGGGACTTAAAATTACCACTTGGTTCTGCCTCGCCTCTTACTGCCGAGCCCGATGTTCAGGTGGTCACCTTGACTGAGGAAGATGAGTTCTTAATCATTGGTTGTGATGGCATTTGGGATGTAATGTCAAGCCAGGAAGCAGTTAGTCTTGTCCGTCGCGGACTAAGAAGGCACGATGACCCTCAACAATGTGCCAGAGAGCTTGTCAAAGAAGCATTGCGGCTACACACAACAGATAATCTTACTGTAATTGTTATTTGTCTGTCTCCTGTTGAAAGCATTGTTGAATCATGTCCGCCTCAAAGGCGAAGATTCAGAGCTTGCTCAATGTCTGAAGAGGCTCGGAACAAATTGAGGAGCTTGCTAGAAAGTAACTGA 1188 0.4377 MVLETEIIYQQSIPVLDVKYHLCVSQENAVKVDVSPASNVVPVFNQLRVSTESISTETSLFGSTVSRSEMKTDSIIEEAVAKFIPVVRSGSCADIGPRGSMDDDHIQIDDLATHLGFVLKSPTRSAFYAVFDGHGGPDAAVFVKNNAMKLFFEDATMLQSYGTDALLMKRLEDTHRKAFLGADLAMADEQSISSSCGTTALTALILGKHLLVANAGDCRAVLCKRGVAVDMSHDHRPSYLPERKRVEELGGYIDDGYLNGYLSVTRALGDWDLKLPLGSASPLTAEPDVQVVTLTEEDEFLIIGCDGIWDVMSSQEAVSLVRRGLRRHDDPQQCARELVKEALRLHTTDNLTVIVICLSPVESIVESCPPQRRRFRACSMSEEARNKLRSLLESN 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02942 395 PANTHER PROTEIN PHOSPHATASE 2C 67 356 IPR015655 GO:0004722|GO:0006470
Vivi4g02942 395 SUPERFAMILY PP2C-like 81 360 IPR036457 -
Vivi4g02942 395 Gene3D - 64 362 IPR036457 -
Vivi4g02942 395 SMART PP2C_SIG_2 103 358 IPR001932 -
Vivi4g02942 395 SMART PP2C_4 78 356 IPR001932 -
Vivi4g02942 395 ProSiteProfiles PPM-type phosphatase domain profile. 88 358 IPR001932 -
Vivi4g02942 395 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Vivi4g02942 395 Pfam Protein phosphatase 2C 97 350 IPR001932 -
Vivi4g02942 395 CDD PP2Cc 87 358 IPR001932 -
Vivi4g02942 395 FunFam Probable protein phosphatase 2C 22 71 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02942 Vivi-Chr4 137369152 137371364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02942 1 392 PP2C-type Phosphatase Gene Family AT1G48040 55.556 3.25e-145 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02942 K14803 - gmx:100798957 639.417