Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi4g02930 | ATGACTTTTAAAAGAAACTCGGAGGCAAGGTGCAACACAAAGTCAGATTCTCCCGCTATTAATGCAAATAAAGTTCAGGAGAAGGAGAAATTATCACACGAGATGAAGAAAAATATTAAGCTTAAAATTAAATACAAGGGAAAGTTAATAAGTGAGATAAATTTTAAAAAGGAGGAAATAGTGAAAGAGTCAAGTGAGCAAGTGAAAGAGTTTGAAAAAAGTAAAATGTTAAAATGTTCAATTTCTAATGAGCCTGTAAAGGAAAACTTTGGATTAAATTTCTACAAGGGTGAAAAAGTAGAAGTAAGAAGCGATGAAGAGGGTTTTGAAGGTTCTTGGTTTACTGCAACAATTGTCGATTATCTGAAGAATGGAAAATATTTAGTTGAATATTTGACATTAAAAACAGATGACTTATGTGAGCAACTAAAAGGAGAAGCTAATGTTTCTGACGTAAGGCCATATCCACCAGAAATCAATCAAGTTTGTCAATTTAAGTTACATGAAAGAGTTGATGTATGGTATAACGATGGATGGTGGGAAGGTAGAGTATCTAGTGTTGTTCATGGTTCCAATGGTAATTTAAAGTATAACGTTTACTTTTGGACTACTAATGAAGAGTTAGAATTTGAACATGATAATATGAGACCTCATCAAGAATGGGTTAGGGGACAATGGATGCTCTCTTCTATGGATTGA | 699 | 0.3305 | MTFKRNSEARCNTKSDSPAINANKVQEKEKLSHEMKKNIKLKIKYKGKLISEINFKKEEIVKESSEQVKEFEKSKMLKCSISNEPVKENFGLNFYKGEKVEVRSDEEGFEGSWFTATIVDYLKNGKYLVEYLTLKTDDLCEQLKGEANVSDVRPYPPEINQVCQFKLHERVDVWYNDGWWEGRVSSVVHGSNGNLKYNVYFWTTNEELEFEHDNMRPHQEWVRGQWMLSSMD | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi4g02930 | 232 | CDD | Tudor_Agenet_AtDUF_rpt1_3 | 94 | 157 | - | - | |
| Vivi4g02930 | 232 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vivi4g02930 | 232 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Vivi4g02930 | 232 | Gene3D | - | 83 | 160 | - | - | |
| Vivi4g02930 | 232 | Pfam | Agenet domain | 97 | 157 | IPR008395 | - | |
| Vivi4g02930 | 232 | SMART | agenet_At_2 | 92 | 160 | IPR014002 | - | |
| Vivi4g02930 | 232 | SMART | agenet_At_2 | 163 | 223 | IPR014002 | - | |
| Vivi4g02930 | 232 | CDD | Tudor_Agenet_AtDUF_rpt2_4 | 169 | 217 | - | - | |
| Vivi4g02930 | 232 | PANTHER | AGENET DOMAIN-CONTAINING PROTEIN-RELATED | 45 | 230 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi4g02930 | Vivi-Chr4 | 136779335 | 136780773 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi4g02930 | 103 | 228 | PHD Transcription Factor Family | AT5G58610 | 28.571 | 6.72e-12 | 62.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi4g02930 | - | - | vvo:131597938 | 473.781 |