Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02922 ATGGAGGATGACGTGGCACGCCATCCACAAGATTATCAGCACCAGACCCAAGAACACCAAAAGCCCCTTTCAACACCATCTTCATTCTCCCACTCCACAACACCACCACCTTGTACACATCTCATCTCTATTTTCCCCTTTAATATCTTCCATAACAACCTTCGATCTTCAAAGGTGCAAGTAGTTGGATGGCCACCAATTAGATTGTTTAGAAAGAAAAGTTTAAAACAAAAGAAAGTGGAAGATGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATTTTAATGTTTACAAAAGTTATTCAGAGCTTCTCATAGCTTTGGAAAATTTATTCAAGTGCACAATTGGTGAATATTCAGAAAGAGAAAGGTATAATGGCTCTGAGCATGCTCCTACTTATGAGTATAAGGATGATGATTGGATGTTGGTTGGAGATGTTCCGTGTAAGTTACAATAA 483 0.3934 MEDDVARHPQDYQHQTQEHQKPLSTPSSFSHSTTPPPCTHLISIFPFNIFHNNLRSSKVQVVGWPPIRLFRKKSLKQKKVEDGSGMYVKVSMAGAPYLRKIDFNVYKSYSELLIALENLFKCTIGEYSERERYNGSEHAPTYEYKDDDWMLVGDVPCKLQ 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02922 160 Pfam AUX/IAA family 51 157 IPR033389 -
Vivi4g02922 160 MobiDBLite consensus disorder prediction 1 15 - -
Vivi4g02922 160 ProSiteProfiles PB1 domain profile. 85 160 IPR000270 GO:0005515
Vivi4g02922 160 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 157 IPR003311 GO:0005634|GO:0006355
Vivi4g02922 160 Gene3D - 79 160 - -
Vivi4g02922 160 MobiDBLite consensus disorder prediction 16 34 - -
Vivi4g02922 160 SUPERFAMILY CAD & PB1 domains 79 156 - -
Vivi4g02922 160 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02922 Vivi-Chr4 136575927 136577109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02922 76 159 B3 DNA Binding Superfamily AT2G46530 31.818 6.13e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi4g02922 AUX_IAA 2e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02922 K14484 - gmx:100792134 166.007