Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02910 ATGAAAATTCTCATTTTTATTTTGTTTTGTATACCATGTTATGCTCTTGCTTTTGAAGTAAAATCCGTCATAGATTCTCCTATGTTAACGAAAAATATAGGAACTAATCGTACAATCATAGTCGATATCAATGGAAAGGGAGACTTTAAATCAGTCCAAGCTGCAATTGATTCAGTTCCAGAAAAAAATTCGAATTGGGTCATCATTCATATTAGAAAAGGAGTATATCGAGAAAAAGTGCATATTCCAAAGACTAAACGTTATATATTCTTGAGAGGAAATGGGAGAGGAAGAACTGCTATTGTTTGGTCTCAAAGTTCATCTGACAACGTAGAGTCTGCCACCTTCAAAGCTGAAGCCCCTGATTTCATTGCCTTTGGAATTAGCTTCAAGAATGAAGCACCAACAGGAGTTGCATATACTTCACAAAATCAATCTGTGGCAGCATTTGTAGCAGCGGACAAAATAGCATTTTACCATTGTGCATTTTATAGTACACATAACACACTCTTTGATTACAAAGGTAGACATTATTATGAGTCGTGTTACATTCAAGGTTCAATTGATTTCATATTTGGTCGTGGAAGAACAATTTTTCAGAGTTGTGAGATATTTGTGATTGATGATAAAAGGATAACAATTCGTGGATCAATAACAGCTGCCAACAAAGAAACTGAACGTGAAATGAGTGGATTTATATTCATTAAAGGCAAAGTTTATGGCATTGGTGGAGTGTACTTAGGAAGGGCCAAAGGTCCTTATTCTAGGGTCATTTTTTCTCATACATATCTCTCAAACACCGTTGTCCCTGAAGGATGGACTAATTGGAGTTATGATGGTAGCACTGAAAATCTTTATCATGCTGAGCATAAATGCCATGGGCCTGGTGCTACAAAAGAAGGAAGAGCTCCTTGGTCAAGGCAACTTACTGATGAACAAGCTGCTAAATTTATATCTATTGATTATATTGATGGCAAGAATTGGTTGCCAGCCTATAAATAA 1002 0.3603 MKILIFILFCIPCYALAFEVKSVIDSPMLTKNIGTNRTIIVDINGKGDFKSVQAAIDSVPEKNSNWVIIHIRKGVYREKVHIPKTKRYIFLRGNGRGRTAIVWSQSSSDNVESATFKAEAPDFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKIAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRTIFQSCEIFVIDDKRITIRGSITAANKETEREMSGFIFIKGKVYGIGGVYLGRAKGPYSRVIFSHTYLSNTVVPEGWTNWSYDGSTENLYHAEHKCHGPGATKEGRAPWSRQLTDEQAAKFISIDYIDGKNWLPAYK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02910 333 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Vivi4g02910 333 FunFam Pectinesterase 33 333 - -
Vivi4g02910 333 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 329 - -
Vivi4g02910 333 Gene3D - 33 333 IPR012334 -
Vivi4g02910 333 SUPERFAMILY Pectin lyase-like 35 331 IPR011050 -
Vivi4g02910 333 Pfam Pectinesterase 39 325 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02910 Vivi-Chr4 136125361 136127767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02910 35 329 Carbohydrate Esterase AT1G05310 39.073 3.33e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02910 - - gmx:100792967 562.762