Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02904 ATGGAAACTCCAGAACCAGAAGGAGAGCTTCTAAAGAAGATTGAAAGGCTTGAAGCTGGTCAAGTTCACCTCAAACAAGAAATGTCAAAGCTCAAGCTTTCTCAACGTAGAAGGTCTCATTCAGTTTCACCTCAACGTTCAAGGTTAGGTGCTTCTGCTGCTTCTTTTTCTGCTGCTGCAAATAACAAAGGGTCTTCTTCACCTCTTCAGAGAGAGAGCCGTGGTGGTGGTAGTAGTAGTTATGATCCTCATCGTCAAAATGGTGGCAAGTATCTCAATATTTTGCAGTCAATTGGTCATTCTGTTCATATATTGGATCTTCATTGTCGTATCATATACTGGAACCCTAGTGCTGAAAACCTGTATGGTTATGCAGCAGAAGAAGTTCTTGGTCAAGATGGGATTGAAGTGCTTGTTGATTCTAGTGAATTTGAGTTGGCGAATGATGTATTCAACCGTGTGAAAATGGGAGAAAGTTGGACTGGTCAGTTTCCTGTTAAGAATAAGACGGGTGATAGGTTTGTAGCGGTTGCGACGAATACGCCTTTCTATGATGATGATGGGAGTTTGGTCGGTGTTATTTGTGTTTCTAGTGATTCAAGACCTTTCCTTGAAAATATAGTTCCTTTTTCGGTTGGGAAGAATGAAGAAAAGGATTCGGGTGTTAGTTTTTCTAAAATTGGGATTACTAATAAACTTGGTCTTGATCCTCAGCAGCCACTTCAGAATGCTCTAGCTTCGAAAATATCGAATTTGGCTTCAAAGGTGAGTAACAAAGTCAAGTCTAGAATCCGGACTCGAGAAAATGGTGTTGGTGGAGAAGGAGAGAGCGGAGAAACTGAACGTGGTTTTTCAGACCAGAGAGAGGATGGTGATTCTAGTGGAGCTAGCACACCTGCCGGAGAGTTGCCACAATCTCCTTTCGGTCTACCTTCTCACATCGAGGAGAGATCACAAGGGAAACCTATGAGAAACTCTGGTGATGAGAGTGAAGAAAAACCGATACACAAAATCATAACTTCTAAGGCGGAAGCATGGATTCAAAAGAAAACTATGTCATGGCCATGGAAAACAAATGATCGGGAAGAATCTGAGTCAAAGAACGTTCGGGTTTCTTGGCCTTGGTTGCAGGGTGATCAAGAAAAAGAGCACGCTAATCAAAAGAATGTGTCTTCTGGATTGAAGCTGGAAAGTCGGGCAAGTGAAAGTTATCAACCAGTTATTAACGAGGCTTCAGGATCTTGGTCATCCTTCAATGCTAACAGCACAAGTAGTACCAGCAGTTGCGGGAGTGGCAGTGGTAGCAGTTCTGCTGCCAATAATAGAGTGGATGTTGACTCCGATTGTTTAGATTACGAAATTTTGTGGGAGGACTTGACAATTGGAGAGTCAATTGGGCAAGGTTCTTGTGGAACTGTATACCATGCTCTGTGGTATGGATCAGATGTTGCGGTCAAGGTTTTCTCAAAGCAAGAATATTCAGAAGATGTAATACAGTCCTTCAGACAAGAGGTGTCTCTGATGAAAAGACTTCGCCATCCAAATATTCTACTCTTTATGGGCGCAGTGACTTCACCTCAGCGTCTATGCATTGTTACAGAGTTTCTCCCACGCGGAAGCTTATTTCGTTTGCTCCAAAGAAACACATCCAAACCAGACTGGAGACGGCGGGTTCACATGGCCTTGGATATTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCTCCAATCATCCACCGAGATTTGAAGACTTCAAATCTTCTAGTCGACAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTATCAAACATGAAACCTATCTTACGACTAAAACGGGAAAAGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAACGAGCCCTCAAATGAAAAGTCCGACGTTTACAGTTTTGGAGTGATATTGTGGGAACTTGCAACAGAAAAAATCCCTTGGGATACTCTCAATGCAATGCAGGTTATTGGAGCTGTAGGGTTCATGAACCATCGACTAGAAATTCCGGAAAATATTGATCCACAGTGGGCTTCAATAATCGAGAGTTGCTGGCATACTGATCCGGCTAGCCGACCAACATTCCAGGAACTGCTGGAAAGGCTTAAAGAGCTGCAAAGACGGTATGCGATTCAGTTCCAAGCAGCCAGATCTGCTGGTGGTGAAGTCACTCGAAAGGAATCCTAG 2214 0.4332 METPEPEGELLKKIERLEAGQVHLKQEMSKLKLSQRRRSHSVSPQRSRLGASAASFSAAANNKGSSSPLQRESRGGGSSSYDPHRQNGGKYLNILQSIGHSVHILDLHCRIIYWNPSAENLYGYAAEEVLGQDGIEVLVDSSEFELANDVFNRVKMGESWTGQFPVKNKTGDRFVAVATNTPFYDDDGSLVGVICVSSDSRPFLENIVPFSVGKNEEKDSGVSFSKIGITNKLGLDPQQPLQNALASKISNLASKVSNKVKSRIRTRENGVGGEGESGETERGFSDQREDGDSSGASTPAGELPQSPFGLPSHIEERSQGKPMRNSGDESEEKPIHKIITSKAEAWIQKKTMSWPWKTNDREESESKNVRVSWPWLQGDQEKEHANQKNVSSGLKLESRASESYQPVINEASGSWSSFNANSTSSTSSCGSGSGSSSAANNRVDVDSDCLDYEILWEDLTIGESIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEDVIQSFRQEVSLMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTSKPDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKTSNLLVDKNWTVKVGDFGLSRIKHETYLTTKTGKGTPQWMAPEVLRNEPSNEKSDVYSFGVILWELATEKIPWDTLNAMQVIGAVGFMNHRLEIPENIDPQWASIIESCWHTDPASRPTFQELLERLKELQRRYAIQFQAARSAGGEVTRKES 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02904 737 SUPERFAMILY PYP-like sensor domain (PAS domain) 93 196 IPR035965 -
Vivi4g02904 737 MobiDBLite consensus disorder prediction 258 342 - -
Vivi4g02904 737 MobiDBLite consensus disorder prediction 375 397 - -
Vivi4g02904 737 Gene3D PAS domain 100 202 - -
Vivi4g02904 737 MobiDBLite consensus disorder prediction 44 85 - -
Vivi4g02904 737 FunFam PAS domain-containing protein tyrosine kinase family protein 537 728 - -
Vivi4g02904 737 CDD PAS 102 199 IPR000014 -
Vivi4g02904 737 Gene3D Phosphorylase Kinase; domain 1 452 536 - -
Vivi4g02904 737 NCBIfam PAS domain S-box protein 90 199 IPR000014 -
Vivi4g02904 737 ProSiteProfiles PAS repeat profile. 87 158 IPR000014 -
Vivi4g02904 737 PRINTS Tyrosine kinase catalytic domain signature 572 590 IPR001245 GO:0004672|GO:0006468
Vivi4g02904 737 PRINTS Tyrosine kinase catalytic domain signature 682 704 IPR001245 GO:0004672|GO:0006468
Vivi4g02904 737 PRINTS Tyrosine kinase catalytic domain signature 533 546 IPR001245 GO:0004672|GO:0006468
Vivi4g02904 737 PRINTS Tyrosine kinase catalytic domain signature 638 660 IPR001245 GO:0004672|GO:0006468
Vivi4g02904 737 PRINTS Tyrosine kinase catalytic domain signature 619 629 IPR001245 GO:0004672|GO:0006468
Vivi4g02904 737 CDD STKc_MAP3K-like 465 711 - -
Vivi4g02904 737 ProSiteProfiles Protein kinase domain profile. 459 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02904 737 SMART pas_2 89 155 IPR000014 -
Vivi4g02904 737 MobiDBLite consensus disorder prediction 27 85 - -
Vivi4g02904 737 Gene3D Transferase(Phosphotransferase) domain 1 537 735 - -
Vivi4g02904 737 SMART serkin_6 459 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02904 737 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 81 717 - -
Vivi4g02904 737 Coils Coil 704 724 - -
Vivi4g02904 737 SUPERFAMILY Protein kinase-like (PK-like) 448 711 IPR011009 -
Vivi4g02904 737 MobiDBLite consensus disorder prediction 261 289 - -
Vivi4g02904 737 MobiDBLite consensus disorder prediction 317 339 - -
Vivi4g02904 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Vivi4g02904 737 FunFam PAS domain-containing protein tyrosine kinase 452 536 - -
Vivi4g02904 737 Pfam PAS domain 103 199 IPR000014 -
Vivi4g02904 737 Pfam Protein tyrosine and serine/threonine kinase 459 711 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02904 Vivi-Chr4 136075757 136080313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02904 1 728 MAP Kinase Kinase Kinase AT3G06620 58.961 0.0 881
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vivi4g02904 PK_Tyr_Ser-Thr 5.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02904 - - gmx:100815858 1035.79