Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02901 ATGGCTTCACATAGCAGAGGAAGAGGTAGAATGACTTCAACAAGTAGAGGAAGAGGTGAGGCCAATGCATCATCAATATCACACCATCAACCTCAACAAGATAACAATAACAACACTAACAACCTCAACAACATCAACAACAACAGAGATAGTAATAAAAGAGAATCAGTATCAATGAGAAAAGCCATAGCACAGTACACAGAAGATGCAAGACTCCATGCCGTTTTCGAACAATCCGGCGACTCTTTCGACTACGCACAATCCATTCGTGTCACGGCAGCTCCTGAATCAGTTCCTGAGCAACAAATCACTGCTTACTTAGCCAAAATCCAACGCGGTGGTTTCATTCAGCCTTTCGGTTCAATGATCGCCGTCGACGAAGATTCTTTCCGCGTTCTTGCTTACTCTGAAAACGCACGTGACATGCTCGGTATCGCTCCTCAATCGGTTCCTTCCATGGAAGATGATTCTTCTTCCTCTTCGTTTTTCGCTTTGGGTGTTGATGTTCGGTCTCTTTTTACTAATTCGAGTTCTGTTCTTCTCGAGAAAGCTTTTGCAGCTCGGGAGATTAGTTTAATGAATCCTATTTGGATCCACTCGAGAACTACTGGTAAGCCGTTTTATGGAATTCTTCATAGGATTGATGTTGGTGTTGTTATTGATTTGGAGCCTGCAAGATCTGAGGATCCAGCGCTTTCGATTGCTGGTGCTGTGCAATCTCAGAAGCTTGCGGTTCGGGCGATTTCGCAGCTTCAGGCGCTTCCTGGTGGGGATGTTAAGGTTCTTTGTGATGCTGTTGTGGAGAGTGTTAGGGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGGTTGATTTAGAGCCTTATATTGGTTTGCATTATCCTGCTACTGATATTCCTCAGGCTTCTAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAGGATGAGGCGCTTGTTCAGCCGGTTTGTTTGGTTGGGAGTACGCTTCGCGCTCCTCATGGTTGTCATGCTCAGTACATGGCAAATATGGGATCAATTGCTTCTTTGGCTATGGCTGTTATTATTAATGGGAATGATGAACACAGTGGTGGGATTGGTGGTACTGGGTGTAGCTCGATGAGGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGTTAGCCGTGCAGTCGTTGGAGAAACGGGTTTTGAAGACACAGACTCTGTTGTGTGATATGTTGCTTAGGGATTCTCCTACTGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTGAGGTGTGATGGGGCTGCTTTGTATTATCAAGGAAACTACCACCCGTTGGGTGTTACCCCGACCGAGTCTCAGATAAGGGATATCATAGATTGGTTGTTGGCCTTTCATAGTGATTCGACGGGGTTGAGTACTGATAGTTTGGCTGATGCTGGTTATCCTGGGGCTGCTTCTCTTGGGGATGCAGTTTGTGGGATGGCAGTTGCGTATATCACTGAGAAAGACTTTCTTTTCTGGTTCAGATCTCATACGGCTAAAGAAATTAAGTGGGGTGGTGCAAAGCATCACCCGGAGGATAAGGATGATGGGCAGAGAATGCATCCACGTTCTTCCTTCAAGGCCTTTTTAGAAGTGGTGAAGAGCCGTAGTATGCAGTGGGAAAATGCAGAAATGGATGCAATTCACTCCCTGCAGCTTATCCTGCGAGACTCGTTTAAGGAAGTTGAGAATAATGATTCAAAGGCTGTTGTGCATACCCATATGGCAGAACTAGAGTTGCAAGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGACATTGATGGTCGCATCAATGGGTGGAATGCTAAGGTTTCCGAATTGACAGGACTTCTGGTAGAGGAGGCTATGGGCAAGTCTTTGGTTCATGATCTTGTGTATAAAGAGTCTCAAGAGGCTGTGGATAAGCTTCTTTCTCATGCATTAAAAGGTGAAGAAGATAAAAACGTTGAGATAAAAATGAAGACTTTTGGCCCGGGGAATCAAAATAAGGCAATTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGCCAGGATGTTACTGGTCAAAAAGTTGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATGCATTGATCCCTCCCATTTTTGCTTCGGATGACAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGCGGTTGGAGCCGTGCAGATGTCATTGGCAAATTGTTGGTGGGAGAGGTTTTTGGTAGTTTCTGTCAATTGAAGGGCTCAGATGCTATGACAAAATTCATGATTGTTTTGCACAATGCACTTGGTGGACATGACACAGACAAATTCCCACTGTCATTTCTTGACAGACATGGAAAGTATGTGCAGACTTTCTTGACCGCAAATAAGAGGGTTAACATGGATGGTCAGATTATTGGCGCTTTTTGCTTTTTACAAATTGTGAGCCCTGAACTTCAACAGGCTTTGACAGTCCAGAAACAACAGGATAGTAGTTCCTTTGCTAGAATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGTCTACATGCCTGACTGATGAGCAAAAGCAGCTTCTTGAGACTAGTGCTGCTTGTGAGAAGCAAATGCTGAAGATAATACGGGACATTGCTCTGGAAAGCATCGAGGATGGGTCCCTGGAGCTTGATAAGCGAGAATTCCTGCTTGAGAATGTCATAAACGCAGTTGTTAGCCAAGTAATGCTATTGCTAAGAGATAGAAAGTTACAGTTAATTCGTGATATTCCTGAAGATATCAAGGCATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTCTTGGCTGATTTCTTAATGAATGTGGTGCGCTATGCCCCATCTCCAGATGGTTGGGTAGAGATTCATGTATTTCCAAGAATAAAACAAATTTCGGATGGACTCACTATTCTGCATGCTGAATTTAGGATGGTGTGTCCTGGTGAAGGTCTTCCACCTGAATTGATTCAAGACATGTTCCATAACAGTCGGTGGGTGACTCAAGAAGGCTTAGGACTGAGCATGAGCAGAAAGATTATAAAGTTAATGAATGGTGAAGTTCAATATGTAAGGGAGGCAGAACGATGCTACTTCTTAGTTCTTCTTGAACTACCTGTGACACGGAGAAGCTCTAAAACTTGCATCTTCATGGCCAAGTGGGTGTCCTGCAACAAATTTCAAGAAAATGCTTGCATCATTAGCAGCTGCATTGGACTCCACTCCATGGTTAGAATGAACCGTAGACGTCTTCTGCTGTACTCTGTAGTGATAGTATTAGTAACTGCTTATGTATTGTTTTTCCTAGTTAACAAATAA 3663 0.43 MASHSRGRGRMTSTSRGRGEANASSISHHQPQQDNNNNTNNLNNINNNRDSNKRESVSMRKAIAQYTEDARLHAVFEQSGDSFDYAQSIRVTAAPESVPEQQITAYLAKIQRGGFIQPFGSMIAVDEDSFRVLAYSENARDMLGIAPQSVPSMEDDSSSSSFFALGVDVRSLFTNSSSVLLEKAFAAREISLMNPIWIHSRTTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQALPGGDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRVDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEHSGGIGGTGCSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAVQSLEKRVLKTQTLLCDMLLRDSPTGIVTQSPSIMDLVRCDGAALYYQGNYHPLGVTPTESQIRDIIDWLLAFHSDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWENAEMDAIHSLQLILRDSFKEVENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDIDGRINGWNAKVSELTGLLVEEAMGKSLVHDLVYKESQEAVDKLLSHALKGEEDKNVEIKMKTFGPGNQNKAIFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRADVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGHDTDKFPLSFLDRHGKYVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALTVQKQQDSSSFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSAACEKQMLKIIRDIALESIEDGSLELDKREFLLENVINAVVSQVMLLLRDRKLQLIRDIPEDIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTILHAEFRMVCPGEGLPPELIQDMFHNSRWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVLLELPVTRRSSKTCIFMAKWVSCNKFQENACIISSCIGLHSMVRMNRRRLLLYSVVIVLVTAYVLFFLVNK 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02901 1220 SMART pas_2 788 858 IPR000014 -
Vivi4g02901 1220 SMART pas_2 657 724 IPR000014 -
Vivi4g02901 1220 FunFam Phytochrome 651 783 - -
Vivi4g02901 1220 Gene3D - 445 618 IPR043150 -
Vivi4g02901 1220 Pfam His Kinase A (phospho-acceptor) domain 934 994 IPR003661 GO:0000155|GO:0007165
Vivi4g02901 1220 SMART HisKA_10 930 994 IPR003661 GO:0000155|GO:0007165
Vivi4g02901 1220 Gene3D - 993 1160 IPR036890 -
Vivi4g02901 1220 CDD PAS 800 908 IPR000014 -
Vivi4g02901 1220 FunFam Phytochrome 802 910 - -
Vivi4g02901 1220 Pfam Phytochrome region 453 627 IPR013515 GO:0006355|GO:0009584
Vivi4g02901 1220 Pfam PAS fold 105 225 IPR013654 GO:0006355
Vivi4g02901 1220 MobiDBLite consensus disorder prediction 1 58 - -
Vivi4g02901 1220 SUPERFAMILY PYP-like sensor domain (PAS domain) 110 227 IPR035965 -
Vivi4g02901 1220 Gene3D PAS domain 802 912 - -
Vivi4g02901 1220 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 930 987 IPR036097 GO:0000155|GO:0007165
Vivi4g02901 1220 ProSitePatterns Phytochrome chromophore attachment site signature. 358 367 IPR013516 -
Vivi4g02901 1220 CDD PAS 666 773 IPR000014 -
Vivi4g02901 1220 Gene3D PAS domain 109 361 - -
Vivi4g02901 1220 CDD HisKA 930 986 IPR003661 GO:0000155|GO:0007165
Vivi4g02901 1220 PANTHER OS08G0260000 PROTEIN 100 992 - -
Vivi4g02901 1220 SMART HKATPase_4 1042 1157 IPR003594 -
Vivi4g02901 1220 PRINTS Phytochrome signature 771 791 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 173 195 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 588 606 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 470 490 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 677 692 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 273 292 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 358 379 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 555 574 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 658 674 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 PRINTS Phytochrome signature 751 768 IPR001294 GO:0006355|GO:0009584
Vivi4g02901 1220 NCBIfam PAS domain S-box protein 662 777 IPR000014 -
Vivi4g02901 1220 ProSiteProfiles PAS repeat profile. 655 726 IPR000014 -
Vivi4g02901 1220 SUPERFAMILY GAF domain-like 448 627 - -
Vivi4g02901 1220 MobiDBLite consensus disorder prediction 1 52 - -
Vivi4g02901 1220 SUPERFAMILY GAF domain-like 238 437 - -
Vivi4g02901 1220 CDD HATPase_Phy-like 1041 1153 IPR044767 -
Vivi4g02901 1220 Gene3D - 913 992 - -
Vivi4g02901 1220 SUPERFAMILY PYP-like sensor domain (PAS domain) 803 906 IPR035965 -
Vivi4g02901 1220 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 258 430 IPR016132 -
Vivi4g02901 1220 Pfam PAS fold 789 908 IPR013767 GO:0006355
Vivi4g02901 1220 Pfam PAS fold 658 773 IPR013767 GO:0006355
Vivi4g02901 1220 Gene3D - 239 601 IPR029016 -
Vivi4g02901 1220 Gene3D PAS domain 650 783 - -
Vivi4g02901 1220 SMART gaf_1 258 450 IPR003018 GO:0005515
Vivi4g02901 1220 FunFam Phytochrome 993 1159 - -
Vivi4g02901 1220 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1042 1148 IPR003594 -
Vivi4g02901 1220 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1005 1154 IPR036890 -
Vivi4g02901 1220 Pfam GAF domain 258 440 IPR003018 GO:0005515
Vivi4g02901 1220 ProSiteProfiles Histidine kinase domain profile. 937 1157 IPR005467 -
Vivi4g02901 1220 FunFam Phytochrome 911 992 - -
Vivi4g02901 1220 SUPERFAMILY PYP-like sensor domain (PAS domain) 662 770 IPR035965 -
Vivi4g02901 1220 ProSiteProfiles PAS repeat profile. 789 841 IPR000014 -
Vivi4g02901 1220 FunFam Phytochrome 445 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02901 Vivi-Chr4 135966369 135971732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02901 2 1155 Histidine Kinase Gene Family AT4G16250 71.256 0.0 1736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02901 K12121 - gmx:100794865 1954.1