Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02862 ATGATGGCACAAAACTTAACGGGGCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGTGATCTTGATGTTGGGGAAACTTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATTCTCAGCAATTACAAATATTTTACTATTCATGTCAAGCCAGTGAATTTGCCCAAAAGTGGTACTCTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACATGGCCAAGATTGCCCAAGCTTTGTTCGAAGATGTTATTGGCTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAGACACAGGAGTCTCAAGGCTCTCCTATTACACCGGTAAGTTCATTAGGTTGTGGATTGACACAGTCTCAAGGCTCTCCTTTTACACCGGTAAATTCAAATTCGAGCTCTATTTCTGATCCAACTACGTCGTGGATTCCATCAGAAGACTTAGATTCTGGAACCAATAGTGCTTTTACTAATGGGCTGAATGGAAATTTAACAGGTAGAAGTCTTGAACAGAAGCTTCATGAGCTCAATACACTTGAATGGGATGACCTAGTGGCTTCTCATGGTAATACTAGTACTATACCCAATGGAGCAGGAAACGAACCACATTTCTATCAACTAAATCAAAGCTTAATGAATGGAAGCGTTAGCAATGTTGCCGGGAGTCCAGCAGAAGTTCATTCTTTTGGGAATTCACCTCCACTAGAGTCTGGGACTAGTAATGTTTCTTACAGTTTCCAAGAATGTGTTAACCCTCAAAAGAATCATGCTATCACTTTTGGTGGTGTTGATTCCGTGGATAACACTTTAGTCAATGAAGGCTTGCAAAGTCAGAACAGCTTTGGAAATTGGATGAACAGTGCCATTTCTAATACACCATGTTCTGTAGAAGCATCAGCTCTTGAATCATCAATTGCTTCATCTGTTCATGATCCATTTTCATCCCTGCGGATGGACAATAATCAGCAACCTTCACTGCCGGAACAAGTGTTTCATATCACTGAATTGGCCCCTGCATGGGCTTCTTCCACGGAAAAAACAAAGGTCCTGATAACTGGATATTTTCACCATGATTATCAACACTTTGCAAAGTCCAATCTAGTGTGCGTCTGTGGCGAAACAATTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATTGCCGCATTCTCCAGGATTCGTAAATCTCTATTTGAGCTTTGATGGCCATAAGCCCATTAGCCAAATTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTGCTGCTTCGATGGAAGATACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTCATTTGCTTTTTACAACACAAAAGACCCTTGATTCTTTCTCTAGTAAAGTATCACCTACTGCACTCGAAGAGAGTAAAAAATTCGCCTCCAAAACATTATTTATTTCCAAAAGTTTGCAACACTTTATGAAGTCGTCCGACGCAAACACAACTCCATTTCCGCAAGCAAAAAATACCTTCTTCGAAATTGCGTTGAAGAACAAGTTAAGAGAATGGCTTTTGGAACGAATTGTACTAAGATGTAAGACTGCGGAGTATGATGCACAAGGGCAAGGTGTGATTCATCTGTGTACACTTTTGGGATATACTTGGGCTATTACATTATTTTCATGGTCAGGCTTGTCGCTCGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCGACTCTATTGTCTTGTGGGGCAAGGCCTAACTTGGTGACAGATCCAACTCCACAAAATCCCGGTGGCTGTACTGCTGCTGACCTTGCTTACATGAATGGATATGATGGTTTAGCCGCTTATCTTTCGGAAAAGTGTTTGGTTGAGCAGTTCAACGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGAAACCACCACGACTGATCCAGTAAATCCAGAGAACCTTACCGAGGACCAATTGTACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGACGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCGCTCACTAAAATTGCGCTATCAGTCGGTTCAATTTAGCAGCCCGGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGATGGCAGCCGCTGTTCATATTCAGCATAGATTCCGTACGTGGAAGTTGCGTAAAGAATTTCTCCACATGCGGCGTCAGGCTATAAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTTTATGGTCTGTTGGAATTCTTGAGAAAGCAATCCTCCGTTGGCGTTTAAGGAGAAAAGGTTTTCGCGGACTTGAGGTGAGTCCTGTCGAAGAGATGATAAATGAGAAGCATGAAAGCGACGTAGAAGAAGAGTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAGGCAATGTTCCGATCGAAGAAAGCACAACAAGAGTATAGCAGGATGAAGATGGCCCATAGTCAAGCAAAGCTGGAACTTGAATTAGAAGACCTTCTCAATTCTGATGTGGACATGTTAACAACAAAGACAGCATAG 2805 0.4235 MMAQNLTGQLVGSEIHGFHTLSDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPVNLPKSGTLVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDCPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVSSLGCGLTQSQGSPFTPVNSNSSSISDPTTSWIPSEDLDSGTNSAFTNGLNGNLTGRSLEQKLHELNTLEWDDLVASHGNTSTIPNGAGNEPHFYQLNQSLMNGSVSNVAGSPAEVHSFGNSPPLESGTSNVSYSFQECVNPQKNHAITFGGVDSVDNTLVNEGLQSQNSFGNWMNSAISNTPCSVEASALESSIASSVHDPFSSLRMDNNQQPSLPEQVFHITELAPAWASSTEKTKVLITGYFHHDYQHFAKSNLVCVCGETIVPVEIVQVGVYRCWVLPHSPGFVNLYLSFDGHKPISQIVNFEYRTPILHDPAASMEDTYNWIEFRLQMRLSHLLFTTQKTLDSFSSKVSPTALEESKKFASKTLFISKSLQHFMKSSDANTTPFPQAKNTFFEIALKNKLREWLLERIVLRCKTAEYDAQGQGVIHLCTLLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGARPNLVTDPTPQNPGGCTAADLAYMNGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLETTTTDPVNPENLTEDQLYLKDTLAAYRTTADAAARIQAAFRERSLKLRYQSVQFSSPEEEARQIVAAMKIQHAFRNFETRKTMAAAVHIQHRFRTWKLRKEFLHMRRQAIKIQAAFRGFQVRRQYRKILWSVGILEKAILRWRLRRKGFRGLEVSPVEEMINEKHESDVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEDLLNSDVDMLTTKTA 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02862 934 FunFam Calmodulin-binding transcription activator 2 778 826 - -
Vivi4g02862 934 ProSiteProfiles IQ motif profile. 883 911 IPR000048 GO:0005515
Vivi4g02862 934 FunFam Calmodulin-binding transcription activator 5 374 470 - -
Vivi4g02862 934 Pfam Ankyrin repeats (3 copies) 557 644 IPR002110 GO:0005515
Vivi4g02862 934 ProSiteProfiles IQ motif profile. 779 808 IPR000048 GO:0005515
Vivi4g02862 934 SUPERFAMILY Ankyrin repeat 550 678 IPR036770 -
Vivi4g02862 934 Gene3D Immunoglobulins 374 469 IPR013783 -
Vivi4g02862 934 FunFam calmodulin-binding transcription activator 5 545 685 - -
Vivi4g02862 934 SMART iq_5 801 823 IPR000048 GO:0005515
Vivi4g02862 934 SMART iq_5 725 747 IPR000048 GO:0005515
Vivi4g02862 934 SMART iq_5 778 800 IPR000048 GO:0005515
Vivi4g02862 934 SMART iq_5 881 903 IPR000048 GO:0005515
Vivi4g02862 934 MobiDBLite consensus disorder prediction 165 187 - -
Vivi4g02862 934 Pfam IQ calmodulin-binding motif 804 823 IPR000048 GO:0005515
Vivi4g02862 934 Pfam IQ calmodulin-binding motif 781 799 IPR000048 GO:0005515
Vivi4g02862 934 Gene3D - 522 678 IPR036770 -
Vivi4g02862 934 SMART ANK_2a 615 644 IPR002110 GO:0005515
Vivi4g02862 934 SMART ANK_2a 654 685 IPR002110 GO:0005515
Vivi4g02862 934 ProSiteProfiles IQ motif profile. 802 826 IPR000048 GO:0005515
Vivi4g02862 934 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 911 - -
Vivi4g02862 934 SMART CG_1_2 29 147 IPR005559 GO:0003677
Vivi4g02862 934 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Vivi4g02862 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 726 829 IPR027417 -
Vivi4g02862 934 Gene3D - 778 826 - -
Vivi4g02862 934 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Vivi4g02862 934 ProSiteProfiles Ankyrin repeat profile. 615 647 IPR002110 GO:0005515
Vivi4g02862 934 SUPERFAMILY E set domains 380 466 IPR014756 -
Vivi4g02862 934 ProSiteProfiles Ankyrin repeat region circular profile. 615 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02862 Vivi-Chr4 134862952 134869568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02862 30 921 CAMTA Transcription Factor Family AT3G16940 54.241 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi4g02862 CG-1 1.4e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02862 K21596 - gmx:100819198 1328.92