Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02860 ATGATGGCACAAAACTTAACGGGGCAGCTTGTTGGTTCAGAGATACATGGCTTCCACACTTTGAGTGATCTTGATGTTGGGGAAACTTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCAAATGAGATTCATGCCATTCTCAGCAATTACAAATATTTTACTATTCATGTCAAGCCAGTGAATTTGCCCAAAAGTGGTACTCTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGATGGGAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAGAGGATCCACGTATATTATGCACATGGCCAAGATTGCCCAAGCTTTGTTCGAAGATGTTATTGGCTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAGACACAGGAGTCTCAAGGCTCTCCTATTACACCGGTAAGTTCATTAGGTTGTGGATTGACACAGTCTCAAGGCTCTCCTTTTACACCGGTAAATTCAAATTCGAGCTCTATTTCTGATCCAACTACGTCGTGGATTCCATCAGAAGACTTAGATTCTGGAACCAATAGTGCTTTTACTAATGGGCTGAATGGAAATTTAACAGGTAGAAGTCTTGAACAGAAGCTTCATGAGCTCAATACACTTGAATGGGATGACCTAGTGGCTTCTCATGGAAACGAACCACATTTCTATCAACTAAATCAAAGCTTAATGAATGGAAGCGTTAGCAATGTTGCCGGGAGTCCAGCAGAAGTTCATTCTTTTGGGAATTCACCTCCACTAGAGTCTGGGACTAGTAATGTTTCTTACAGTTTCCAAGAATGTGTTAACCCTCAAAAGAATCATGCTATCACTTTTGGTGGTGTTGATTCCGTGGATAACACTTTAGTCAATGAAGGCTTGCAAAGTCAGAACAGCTTTGGAAATTGGATGAACAGTGCCATTTCTAATACACCATGTTCTGTAGAAGCATCAGCTCTTGAATCATCAATTGCTTCATCTGTTCATGATCCATTTTCATCCCTGCGGATGGACAATAATCAGCAACCTTCACTGCCGGAACAAGTGTTTCATATCACTGAATTGGCCCCTGCATGGGCTTCTTCCACGGAAAAAACAAAGGTCCTGATAACTGGATATTTTCACCATGATTATCAACACTTTGCAAAGTCCAATCTAGTGTGCGTCTGTGGCGAAACAATTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATTGCCGCATTCTCCAGGATTCGTAAATCTCTATTTGAGCTTTGATGGCCATAAGCCCATTAGCCAAATTGTTAATTTTGAGTATCGTACTCCTATTTTGCACGACCCTGCTGCTTCGATGGAAGATACATACAACTGGATTGAGTTTCGACTTCAGATGAGGCTTTCTCATTTGCTTTTTACAACACAAAAGACCCTTGATTCTTTCTCTAGTAAAGTATCACCTACTGCACTCGAAGAGAGTAAAAAATTCGCCTCCAAAACATTATTTATTTCCAAAAGTTTGCAACACTTTATGAAGTCGTCCGACGCAAACACAACTCCATTTCCGCAAGCAAAAAATACCTTCTTCGAAATTGCGTTGAAGAACAAGTTAAGAGAATGGCTTTTGGAACGAATTGTACTAAGATGTAAGACTGCGGAGTATGATGCACAAGGGCAAGGTGTGATTCATCTGTGTACACTTTTGGGATATACTTGGGCTATTACATTATTTTCATGGTCAGGCTTGTCGCTCGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCGACTCTATTGTCTTGTGGGGCAAGGCCTAACTTGGTGACAGATCCAACTCCACAAAATCCCGGTGGCTGTACTGCTGCTGACCTTGCTTACATGAATGGATATGATGGTTTAGCCGCTTATCTTTCGGAAAAGTGTTTGGTTGAGCAGTTCAACGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCGAAACCACCACGACTGATCCAGTAAATCCAGAGAACCTTACCGAGGACCAATTGTACCTAAAGGATACATTGGCAGCTTACCGAACAACAGCTGACGCAGCAGCACGCATACAAGCTGCGTTTAGAGAGCGCTCACTAAAATTGCGCTATCAGTCGGTTCAATTTAGCAGCCCGGAGGAGGAAGCACGCCAAATAGTAGCAGCAATGAAGATTCAACATGCCTTTCGCAACTTTGAGACAAGGAAAACGATGGCAGCCGCTGTTCATATTCAGCATAGATTCCGTACGTGGAAGTTGCGTAAAGAATTTCTCCACATGCGGCGTCAGGCTATAAAAATTCAAGCTGCATTCAGGGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTTTATGGTCTGTTGGAATTCTTGAGAAAGCAATCCTCCGTTGGCGTTTAAGGAGAAAAGGTTTTCGCGGACTTGAGGTGAGTCCTGTCGAAGAGATGATAAATGAGAAGCATGAAAGCGACGTAGAAGAAGAGTTCTTTAAGACCGGTAGGAAACAAGCAGAAGAACGTGTTGAGAGGTCTGTGGTACGTGTACAGGCAATGTTCCGATCGAAGAAAGCACAACAAGAGTATAGCAGGATGAAGATGGCCCATAGTCAAGCAAAGCTGGAACTTGAATTAGAAGACCTTCTCAATTCTGATGTGGACATGTTAACAACAAAGACAGCATAG 2775 0.4238 MMAQNLTGQLVGSEIHGFHTLSDLDVGETLEEAKSRWLRPNEIHAILSNYKYFTIHVKPVNLPKSGTLVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDCPSFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVSSLGCGLTQSQGSPFTPVNSNSSSISDPTTSWIPSEDLDSGTNSAFTNGLNGNLTGRSLEQKLHELNTLEWDDLVASHGNEPHFYQLNQSLMNGSVSNVAGSPAEVHSFGNSPPLESGTSNVSYSFQECVNPQKNHAITFGGVDSVDNTLVNEGLQSQNSFGNWMNSAISNTPCSVEASALESSIASSVHDPFSSLRMDNNQQPSLPEQVFHITELAPAWASSTEKTKVLITGYFHHDYQHFAKSNLVCVCGETIVPVEIVQVGVYRCWVLPHSPGFVNLYLSFDGHKPISQIVNFEYRTPILHDPAASMEDTYNWIEFRLQMRLSHLLFTTQKTLDSFSSKVSPTALEESKKFASKTLFISKSLQHFMKSSDANTTPFPQAKNTFFEIALKNKLREWLLERIVLRCKTAEYDAQGQGVIHLCTLLGYTWAITLFSWSGLSLDFRDKFGWTALHWAAYNGMEKMVATLLSCGARPNLVTDPTPQNPGGCTAADLAYMNGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLETTTTDPVNPENLTEDQLYLKDTLAAYRTTADAAARIQAAFRERSLKLRYQSVQFSSPEEEARQIVAAMKIQHAFRNFETRKTMAAAVHIQHRFRTWKLRKEFLHMRRQAIKIQAAFRGFQVRRQYRKILWSVGILEKAILRWRLRRKGFRGLEVSPVEEMINEKHESDVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAKLELELEDLLNSDVDMLTTKTA 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02860 924 FunFam Calmodulin-binding transcription activator 2 768 816 - -
Vivi4g02860 924 SUPERFAMILY E set domains 370 456 IPR014756 -
Vivi4g02860 924 SMART ANK_2a 644 675 IPR002110 GO:0005515
Vivi4g02860 924 SMART ANK_2a 605 634 IPR002110 GO:0005515
Vivi4g02860 924 FunFam calmodulin-binding transcription activator 5 535 675 - -
Vivi4g02860 924 Pfam Ankyrin repeats (3 copies) 547 634 IPR002110 GO:0005515
Vivi4g02860 924 Gene3D - 768 816 - -
Vivi4g02860 924 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Vivi4g02860 924 FunFam Calmodulin-binding transcription activator 5 364 460 - -
Vivi4g02860 924 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 25 901 - -
Vivi4g02860 924 Pfam CG-1 domain 32 145 IPR005559 GO:0003677
Vivi4g02860 924 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Vivi4g02860 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 819 IPR027417 -
Vivi4g02860 924 Gene3D - 512 668 IPR036770 -
Vivi4g02860 924 Pfam IQ calmodulin-binding motif 794 813 IPR000048 GO:0005515
Vivi4g02860 924 Pfam IQ calmodulin-binding motif 771 789 IPR000048 GO:0005515
Vivi4g02860 924 MobiDBLite consensus disorder prediction 165 187 - -
Vivi4g02860 924 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Vivi4g02860 924 SUPERFAMILY Ankyrin repeat 540 668 IPR036770 -
Vivi4g02860 924 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Vivi4g02860 924 SMART CG_1_2 29 147 IPR005559 GO:0003677
Vivi4g02860 924 SMART iq_5 791 813 IPR000048 GO:0005515
Vivi4g02860 924 SMART iq_5 715 737 IPR000048 GO:0005515
Vivi4g02860 924 SMART iq_5 871 893 IPR000048 GO:0005515
Vivi4g02860 924 SMART iq_5 768 790 IPR000048 GO:0005515
Vivi4g02860 924 Gene3D Immunoglobulins 364 459 IPR013783 -
Vivi4g02860 924 ProSiteProfiles CG-1 DNA-binding domain profile. 26 152 IPR005559 GO:0003677
Vivi4g02860 924 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02860 Vivi-Chr4 134862952 134869570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02860 30 911 CAMTA Transcription Factor Family AT3G16940 54.628 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi4g02860 CG-1 1.4e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02860 K21596 - gmx:100819198 1315.44