Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02838 ATGCACCAACAAAGCAAACCCACCATGACTAGTACTTCATCTAAAAACCCTATGCACAACAATGAAGAGAAACCCTCTTCATCTTCACCAACATTGAAGCTATTCGGTTTCTCATTAACACCATCTAACACCCTTTCTTGTAACAACAAAAGATTTAGATGTTATTTCTGTCGCCGCGAATTTGCCAATTCTCAAGCTTTAGGAGGCCATCAAAACGCGCACAAAAGAGAACGACAAAGAGCACACTTTCTTTCCATTCTTCCTCATCATCAACGCTTTGTAGCATCTTCATCTTATCATCCCATGATAGAACAACATAGAGCACCAAGAGCAATGTTTTTTCATCCCCGCGGATCACCGGGCGCAATATGGGAGAGACAACCTTATGAAGAAGGGCCTAATGAGATCCATTTTGATGCAGGTACATCCAGAAATAATGGACAAGTACACAATAATATTATTGATGGTGATGTTGATCTTAACTTGAGTCTAGCTTGTGTACCTATCAATTCCAAGGACAAAGAGTTTGGAAGGGAGTGA 540 0.4056 MHQQSKPTMTSTSSKNPMHNNEEKPSSSSPTLKLFGFSLTPSNTLSCNNKRFRCYFCRREFANSQALGGHQNAHKRERQRAHFLSILPHHQRFVASSSYHPMIEQHRAPRAMFFHPRGSPGAIWERQPYEEGPNEIHFDAGTSRNNGQVHNNIIDGDVDLNLSLACVPINSKDKEFGRE 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02838 179 PANTHER ZINC FINGER PROTEIN 5 20 165 IPR044299 GO:0010090
Vivi4g02838 179 Gene3D Classic Zinc Finger 26 99 - -
Vivi4g02838 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Vivi4g02838 179 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Vivi4g02838 179 SUPERFAMILY beta-beta-alpha zinc fingers 48 79 IPR036236 -
Vivi4g02838 179 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02838 Vivi-Chr4 134132308 134132990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02838 26 93 C2H2 Transcription Factor Family AT1G67030 41.860 4.13e-13 62.8