LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g02835	ATGGTGAAGTTTACAGGAGGAACAACTGTTTCTGATGTCAACAAACATGAGATACAGCCAAAGCAACACACGTTTACGAGTTTTGCTGATATTATAACCGAGAAAACTCAGAAAGATATGCTTATTGACATTATTGGTATCGTTGAAAGTATCGGGTATGCTCAGAAACATGGCGGAAGTAAGAAATTACAGGTTAATTTGGTCCTAAGGGATGCAACCAACAATACAATTAATTGCACCCTTTGGGAGACTTATGCTGCTCAATTCTTCAAGTTTGACGAAGAACGGGTCAATACGTCCGCGCCAACTGTTCTTTTGCTTCGATATGCAAAAGTTAAAGAAGAAGGACAGTATCCGCTTTCGGTTACAAACACCTTCCATGTTACGAAACTACATATCAACGCAGATTTGCCAGCAGTGAAACATTTCGTTGAAAGTATACCTAAGGACACTTTGAGCGCGGTCTCTAGCCAGCTTAGCCTAAATTCACAGAACCTCTCCCGCTCCACAAATTCTGACAATTCTAGACAAACTCCAATGCAGAGATTGTTGTCTGGTGCTTTGGCTCTGCCTCTCAGTGAAATCAAGAAACTGAAACAGGTCTCTTTCTGCGCTACTGTTGTTGAAACCAAAAAACTTATCGCCTCTTCCTTTGGCTGGTGTTACCGAGCATGCCATTCATGTCCTAAAGCTGCTCGTGGTGATGAACCTCCTTTCATATGCGATAACAAGCATAAAACTGAGGCCGAAATCTTTAGGTATAAAATTGAAATAGAGGCTGTGCATTTAGGCGTACCTTGCAAATTCATATTTTGGGACCGGGAATGTACGGATATCTTGGAAATATCTGCTGCTCAAATGCGGGATACAATGATACAGGCTGGAATCACTGATCCTCTGGAGTTCCCATTAGCTCTTGATAAGATGCTTGACTTGGAGCTGGCTTTTAGAGTTACATGGCAGCCAAGCTGGGACTCTTGCTCCGTTGTTATGTTCATTAAAGATAAACCCTTCGTCGAACAATTAAAGGCTCCGTGGAAACATACCCAGATTAAGGAGAGCGTCGATGAAGCAAAAACTAATGTTGCAGAAGAGTATGAAATTGTTACGGATGTAGAAATTACATCCAAGCATAATCCTGATCCGGTCACACCTACTGCAAAACGGCATATTGGTGATGGCTCGAACGAATCAACTACCGTGCCTGGATGTGCGACGGAGAGCTGTCATCAACAAAACTGA	1242	0.4243	MVKFTGGTTVSDVNKHEIQPKQHTFTSFADIITEKTQKDMLIDIIGIVESIGYAQKHGGSKKLQVNLVLRDATNNTINCTLWETYAAQFFKFDEERVNTSAPTVLLLRYAKVKEEGQYPLSVTNTFHVTKLHINADLPAVKHFVESIPKDTLSAVSSQLSLNSQNLSRSTNSDNSRQTPMQRLLSGALALPLSEIKKLKQVSFCATVVETKKLIASSFGWCYRACHSCPKAARGDEPPFICDNKHKTEAEIFRYKIEIEAVHLGVPCKFIFWDRECTDILEISAAQMRDTMIQAGITDPLEFPLALDKMLDLELAFRVTWQPSWDSCSVVMFIKDKPFVEQLKAPWKHTQIKESVDEAKTNVAEEYEIVTDVEITSKHNPDPVTPTAKRHIGDGSNESTTVPGCATESCHQQN	413

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g02835	413	CDD	RPA1_DBD_B_like	43	146	-	-
	Vivi4g02835	413	SUPERFAMILY	Nucleic acid-binding proteins	23	150	IPR012340	-
	Vivi4g02835	413	Gene3D	-	17	154	IPR012340	-
	Vivi4g02835	413	Gene3D	-	167	334	IPR012340	-
	Vivi4g02835	413	Pfam	Replication protein A OB domain	34	125	IPR031657	-
	Vivi4g02835	413	MobiDBLite	consensus disorder prediction	391	413	-	-
	Vivi4g02835	413	MobiDBLite	consensus disorder prediction	376	413	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g02835	Vivi-Chr4	134075645	134077969	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi4g02835	18	259	Core DNA Replication Machinery Family	AT2G06510	23.643	1.89e-06	48.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g02835	-		-	vvo:131597911	820.461