Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02830 ATGTCGGACGGAGCCAGTCTTGTGTTAGAATCATCTGAAAACGGGACTGATTTGTCTCAGGATGACATTGGCACTGTTGAGGAAACACCGGAGGAAACAATTTTGTCGAGACAAACTTCTGTTAACCTTGTTCCTTTTATTGGTCAAAGATTTGTCTCTCAAGAAGCTGCTTATGAGTTTTATTGCAGTTTTGCTAAACAGTTTGGTTTTTCTATTAGACGGCACCGTACCCGAGGGAAAGATGGGGTTGGCCGAGGAGTAACAAGGAGGGATTTTACTTGCCATAGAGGTGGATTTCCTCAAAATAAACATTCTGAAGATGTGGGGAAGGTGCAAAGGAACCGTAAATCATCTCGCTGTGGTTGCCAAGCGTATCTGCGTATTGTGAAAAGGGTGGATTTTGATGTCCCTGAATGGCGTGTTACTGGTTTTAGAAACATTCATAATCATGAGTTGTTGAAATCCAATGAGGTGCGTCTTCTTCCATCATACTGTCCAATATCGCCTGATGATAAGAGCCGCATATGCATGTTTGCCAAAGCTGGAATGTCGGTAAGACAAATGTTGAGATTAATGGAGCTAGAGAAGGGCCTCAAACTTGGCTGTCTTCCTTTTACAGAGATAGATGTGAGAAACTTGTTGCAGTCTTTCAGAAATGTGGATAAAGATAATGATCCTATTGATCTGATTGCAATGTGTAAGAGATTAAAAGATGAAAATCACAACTTCAAGTATGACTTTAAGATAGATAATAATAACAGGCTCGAGTACATTGCGTGGTCCTACGGCTCATCAATTCAATCATATGAAGTATTTGGAGATGCTGTGGTTTTTGATACAACCTACCGAGTAGAGGCTTATGACATGCTGTTGGGAATTTGGCTTGGAGTCGACAATAATGGAATGATATGTTGCTTTAGTTGTGCACTTCTAAGGGACGAAAATATGCCATCTTTTTCATGGGCTTTAAAGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCACAAACAATACTGACTGATCATAACATGTGGCTGAAAGAAGCTATTGCTGTTGAAATGCCTGAAACTAAACACGCCTTTTGTATATGGCATATTCTCTCCAAATTCTCTGACTGGTTTTCTTTACTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCATCGGCTCTACAATTTGGAAATGGTGGAAGATTTCGAACAAGGCTGGAGGCAAATGATTGATAATTATGGACTCCACGCAAATAAACATATTATTAGCCTATACTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGCTATTCTTCTTTGCAGGATTGACCAGTACTAATCAGACCGAGTCCGTTAATGTTTTCATCCAACGGTTCTTAAGTGCCCAATCTCAACCAGAGCGCTTTTTAGAGCAAGTGGCTGATATTGTTGATTTTAACGACCGAGCCGGAGCAAAGCAAAAGATGCAAAGGAAAACACAGAAAGTGATCCTCAAAACTGGTTCACCTATAGAATCCCATGCCGCCACTATACTTACTCCTTATGCCTTGAGCAAACTCCAGGAAGAGTTAGTTTCGGCACCACAATATGCATCCCTTATGGTTGATGAAGGTTCTTTCCAGGTCAGACACCACTCTCAGACAGATGGAGGTTGCAAAGTGCTTTGGCTTCCTTGTCAAGAGCACATCAGCTGCAGCTGTCATCTGTTCGAATTTTCAGGCATCTTATGTAAACACGTGCTACGTGTCATGTCAACTAATAACTGTTTTCACATCCCGGATCAATATTTGCCGCTCCGATGGAGAACCATCAGTTCATCTTCTGTTAACCATTTTCAGGGTGCAAGTGGCATGGATCAGCCTGAAAGGATACAGTTTTTGGAGTCTTTGGTTTCAACCCTTCTAATGGAATCCGTCGAAACCGATGAACGCCTTGATGTAGCTTGTGACCAAGTTTCTGTAGTTATATCACGTATCAAAACTCTTCCCAGGTCATCACATGCGGTAAATGACATTACATTTAGTTATGCATCCGATTCATTGATCTTGCCAGAGGTAGAAGATACCGATGAAATGATTAACGGTTTTACAATCTCAAACCCCCATGATTCTATGGGTTTAGGTAAGTTAAAGGAGAGAAGGGTAAGAGACGGAGTTGATCTCACTAGAAAACGTAGGCAGTTCTCGGCACCATTGTGTGTACAATATGGACATGATGGATCTGATTGCTCGATAATGGCCGACGATAATATTAGTGAAGATGCATTAGGGTATATGTAG 2280 0.4132 MSDGASLVLESSENGTDLSQDDIGTVEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQFGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGFPQNKHSEDVGKVQRNRKSSRCGCQAYLRIVKRVDFDVPEWRVTGFRNIHNHELLKSNEVRLLPSYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGLKLGCLPFTEIDVRNLLQSFRNVDKDNDPIDLIAMCKRLKDENHNFKYDFKIDNNNRLEYIAWSYGSSIQSYEVFGDAVVFDTTYRVEAYDMLLGIWLGVDNNGMICCFSCALLRDENMPSFSWALKAFLGFMKGKAPQTILTDHNMWLKEAIAVEMPETKHAFCIWHILSKFSDWFSLLLGSQYDEWKAEFHRLYNLEMVEDFEQGWRQMIDNYGLHANKHIISLYSLRTFWALPFLRLFFFAGLTSTNQTESVNVFIQRFLSAQSQPERFLEQVADIVDFNDRAGAKQKMQRKTQKVILKTGSPIESHAATILTPYALSKLQEELVSAPQYASLMVDEGSFQVRHHSQTDGGCKVLWLPCQEHISCSCHLFEFSGILCKHVLRVMSTNNCFHIPDQYLPLRWRTISSSSVNHFQGASGMDQPERIQFLESLVSTLLMESVETDERLDVACDQVSVVISRIKTLPRSSHAVNDITFSYASDSLILPEVEDTDEMINGFTISNPHDSMGLGKLKERRVRDGVDLTRKRRQFSAPLCVQYGHDGSDCSIMADDNISEDALGYM 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02830 759 Pfam MULE transposase domain 276 368 IPR018289 -
Vivi4g02830 759 Pfam SWIM zinc finger 562 585 IPR007527 GO:0008270
Vivi4g02830 759 Pfam FAR1 DNA-binding domain 59 153 IPR004330 -
Vivi4g02830 759 ProSiteProfiles Zinc finger SWIM-type profile. 540 588 IPR007527 GO:0008270
Vivi4g02830 759 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 607 IPR031052 GO:0006355
Vivi4g02830 759 MobiDBLite consensus disorder prediction 1 23 - -
Vivi4g02830 759 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g02830 759 SMART 26again6 563 590 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02830 Vivi-Chr4 133992735 133997244 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vivi4g02830 FAR1 2.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02830 - - gmx:100778434 1375.53