Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02823 ATGAAACTCATCAACGACAAACTTCCCATGCCAAGTTCTACTTCTACTTCATCATCAAGACTCGCCGACCTTGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTGCTTGTTGTGGATGATGACCCTACCTGTCTCATGATCCTTGAGAGGATGCTCCGGTTTTGCTTATACCAAGTTACCAAATGTAAGAGGGCTGAGGTTGCATTATCACTTCTTAGAGAGAATAAAAATGGGTTTGACATTGTTTTAAGTGATGTGCATATGCCTGACATGGATGGGTTCAAGCTTTTAGAACATATTGGATTGGAGATGGATCTTCCTGTTATTATGATGTCGGCGGATGATGGAAAAAATGTGGTAATGAAAGGTGTGAAACATGGTGCTTGTGATTATTTGATCAAGCCGGTGCGGATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTAGGAAGAGAAAGAATCAGTGGAAGGATCTGAAGCAATGTGGTGGTGGGTTAGATGATGGAGATCGACAACAAAAGGTGTCTGGTGATGGTGATTACTCATCTTCTGCAAATGAGGGGAAGAGCTCGAGGAAGAGGAGGGATGAGGAAGATGAAGCAGATGAGAGGGATGATTGTTCCACGATGAAGAAGCCGCGAGTTGTTTGGTCTATTGAGCTGCATCAACAGTTCATGGCTGTTGTGAATCAAGTGGGATTAGATAAGGCTGTTCCTAAAAAGATTATGGAAATGATGAATGTTCCTGGGCTCACTAGAGAAAACGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTTCGAAGGTTGAGTGGAGTTTCGCAACATCAGAGTAACTTGAACAACCCCTTCATGAGTCCACAAGAGTCAATATTTGCGTCAACGTCATTAAATGGAATTGATGTTCAAACTCTTTCACCCGCTGGCCAGCTCTCAAATCAAAGTCTAGCCAAGCTTCAAGCAGCTGGACTTTTCAGTTCCGAGAACTCAAAACTAAGATTTGGAGAAGGGCATCTGCAAAATATGAGCAGCAATAAACCAATGAACTTTCTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGTTTGCCAATTTGCACCAGTCTGTTCAACCATTTGGCAGCACGAATACAGTCAATGCTTCTGCTACCCCAAGAGGCCCGTGGTTGATGCAGATGGCTCAGTCTCAACCTAGACGTCAGATGCTAAACGAGAATACCAATTCTCATGCTACAAGGTTTCCGTCATCTTTCGTGCAGCCTACAGGACCAATCGGAGTTTCTAATGGTTTTGTAGGAAATGTGATCGCTGATACAAGCAACATAACTTACGCCTATAATTCAGTTGCTCAAGGTAACGTTGACGCATCACCTTCGAATTTAGGCCATTGCAGTTTTTCCTCTATCCAACATGCCGGACAAAATAGAGACGGTAGTTTGATCGGAAAATCATTGATCTCTACTGGTGATGGTATGAGTCAAGGTAATCTCCAAAATGTTGGTCAACACCTCAATACACTTCTTGTTGAAAATTCATCAAGGGTTAAAAGTGAAAGAATTCCTAACCCAAGCTTCGGGATTAACCCTTTCTCTGAGCAATTCGGCCAAGAGGATCTCATGAGTGCATTTCTCAATCAGCACCAAGGCGTTGGTCCCGTCGAAAGTGAGTTTGACTTCGATGGATATTCCCTAGATAACATTCCGGTCTATAACAGATCCTGTTAG 1725 0.4359 MKLINDKLPMPSSTSTSSSRLADLVSDQFPAGLRVLVVDDDPTCLMILERMLRFCLYQVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVKHGACDYLIKPVRIEALKNIWQHVVRKRKNQWKDLKQCGGGLDDGDRQQKVSGDGDYSSSANEGKSSRKRRDEEDEADERDDCSTMKKPRVVWSIELHQQFMAVVNQVGLDKAVPKKIMEMMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNLNNPFMSPQESIFASTSLNGIDVQTLSPAGQLSNQSLAKLQAAGLFSSENSKLRFGEGHLQNMSSNKPMNFLHGIPTNMEPKQFANLHQSVQPFGSTNTVNASATPRGPWLMQMAQSQPRRQMLNENTNSHATRFPSSFVQPTGPIGVSNGFVGNVIADTSNITYAYNSVAQGNVDASPSNLGHCSFSSIQHAGQNRDGSLIGKSLISTGDGMSQGNLQNVGQHLNTLLVENSSRVKSERIPNPSFGINPFSEQFGQEDLMSAFLNQHQGVGPVESEFDFDGYSLDNIPVYNRSC 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02823 574 Gene3D - 211 271 - -
Vivi4g02823 574 FunFam Two-component response regulator 33 170 - -
Vivi4g02823 574 PIRSF RR_ARR_type-B 10 423 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi4g02823 574 PIRSF RR_ARR_type-B 391 561 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vivi4g02823 574 MobiDBLite consensus disorder prediction 160 175 - -
Vivi4g02823 574 SUPERFAMILY CheY-like 32 155 IPR011006 -
Vivi4g02823 574 FunFam Two-component response regulator 208 271 - -
Vivi4g02823 574 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Vivi4g02823 574 CDD REC_typeB_ARR-like 35 149 - -
Vivi4g02823 574 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Vivi4g02823 574 Gene3D - 33 210 - -
Vivi4g02823 574 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Vivi4g02823 574 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 344 IPR045279 GO:0009736
Vivi4g02823 574 MobiDBLite consensus disorder prediction 160 208 - -
Vivi4g02823 574 SMART REC_2 33 145 IPR001789 GO:0000160
Vivi4g02823 574 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Vivi4g02823 574 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
Vivi4g02823 574 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vivi4g02823 574 MobiDBLite consensus disorder prediction 187 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02823 Vivi-Chr4 133776198 133778974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02823 512 569 Response Regulator Gene Family AT3G16857 57.627 3.57e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vivi4g02823 Response_reg 2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02823 - K14491 tpra:123885541 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02823 4 133776198 133778974 Vivi4g02823 4 133776198 133778974 ECH
Vivi1g01064 1 22602948 22607061 Vivi4g02823 4 133776198 133778974 PCT