Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02749 ATGTGTGGTGGTGCTATCATCTCAGATTTCATTGGTGTCAAGCGTGACCGTGACCTCTGGTTTGAGCTTGATCCTTCTGTTGATCTACTTGGTCTCGGTGCTGCTACTTACACCCCCACTCCCAAAGAGTTACCTCCCCTCCACTTTCCACAATTTTACTCACCCAAAAGAGTGGTAGCATGTGACATTGCGGAGAAGAAACAAAGCTTGGTAACGGTAGAGAATGGTAAGAAAAGCACTGGAGGGAAAAGAGCTCGTAAGAATGTTTACAGAGGAATCAGGCAGAGGCCATGGGGGAAGTGGGCTGCTGAAATAAGGGACCCACAGCAAGGTGTCCGTGTCTGGCTCGGTACTTTCTCGACGGCCGAAGAGGCCGCCAGAGCGTACGATGCTGCCGCGAAGAGAATCCGCGGAGACAAGGCTAAGCTCAATTTCCCAGATGCTCCTGTTGGTTATGCTGATAAAGCTGTCACCGCTCCTCCGATGAAGAAGCGGTGTGTCAGCTCTAGTTCTGATCAAGCCAGTTCGCAGCAGGCTAGCTCTGAGTCTGTTGGGTCTGAGCTTGATCAGGAGATGGAAATCAAGAAGAAGATGTCTGATCTTGAATGGATCCTAGGTTTGGAGAATGACCTTCCTCCGTTTCCTCAGTCTCAGGTTCAGACTCCGGCTCAAGTTGTGACCCAATTTCAGCCTGAATCTGTGCCTGTGCCTGGGCCGTTCACTATGCCTGCTGATTTCGACAACAGCTTCATGGATGCATGGACCTTTGAGGAAATGGTTGATCCAATCCATAACCTGATTTTTAACTAG 810 0.4988 MCGGAIISDFIGVKRDRDLWFELDPSVDLLGLGAATYTPTPKELPPLHFPQFYSPKRVVACDIAEKKQSLVTVENGKKSTGGKRARKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFSTAEEAARAYDAAAKRIRGDKAKLNFPDAPVGYADKAVTAPPMKKRCVSSSSDQASSQQASSESVGSELDQEMEIKKKMSDLEWILGLENDLPPFPQSQVQTPAQVVTQFQPESVPVPGPFTMPADFDNSFMDAWTFEEMVDPIHNLIFN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02749 269 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Vivi4g02749 269 MobiDBLite consensus disorder prediction 161 189 - -
Vivi4g02749 269 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Vivi4g02749 269 CDD AP2 90 148 IPR001471 GO:0003700|GO:0006355
Vivi4g02749 269 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
Vivi4g02749 269 PANTHER DNA-BINDING DOMAIN 79 186 IPR044808 GO:0003700|GO:0009873
Vivi4g02749 269 FunFam Ethylene-responsive transcription factor 2 88 147 - -
Vivi4g02749 269 Gene3D AP2/ERF domain 89 147 IPR036955 GO:0003700|GO:0006355
Vivi4g02749 269 SUPERFAMILY DNA-binding domain 89 147 IPR016177 GO:0003677
Vivi4g02749 269 MobiDBLite consensus disorder prediction 164 187 - -
Vivi4g02749 269 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Vivi4g02749 269 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02749 Vivi-Chr4 130956887 130958725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02749 1 225 AP2-EREBP Transcription Factor Family AT3G16770 40.310 2.82e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi4g02749 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02749 K09286 - gmx:100817253 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02749 4 130956887 130958725 Vivi4g02749 4 130956887 130958725 ECH
Vivi4g02749 4 130956887 130958725 Vivi4g02749 4 130956887 130958725 PCT