Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02730 ATGGATAAAAACGATGATCCCACCATACCCAACTTCAACAATGAAAGTCCCAACATTCCCAACAACTTCGATTCAAAAAGCTACAACCTCAGTGGCAAAATCATGCTCTGCGCCATAGTTCTTCTCTTCTTCGTCATCGTTCTAATGCTATGTCTCCATCTCTACGCTCGCTGGTACCTTGTCCAGTCTCGCCGCCGCCGCAACCGTCTCCGTCGCCGCAGTCAGCTAGTTTTCTTCACCGACAATCCAACAACGACCATCTCCGTCACCACATCCCGCGGCCTCGACGGCTCTGTCATCGCGAAACTACCCTTATTCTTATACGATCCGGAGACTCACCCTCACCCGGAAAACGCCATGGAATGTGCGGTTTGTTTGTCGGAGTTTGAACCCGGTGAAACGGGTCGGGTTTTACCGAAATGTAACCATAGTTTTCACACGGAATGTATTGACATGTGGTTTCATTCTCACTCCACGTGTCCACTTTGTCGCGCACCGGTTGAGACAACATTCGAACCGCAACCCGAGGTTGTTATAACGGTTAGTGAAGCAGAATCCGGTTCGGGTTCTGGTTCGAGTCACGGTTCGGTTTTGGAAGACGAGAATTTGAACCGGACCGGGAAAGAGATTTGTTCGAGTTCGGTTGGGTTAAGAAGAAAACCGTCTTTTACGGGAGTGACTATTGAGGTGCCTACGAGGAATGAAGAGTCGTGTGACTCGCCGTCGTCGTTTCGGTCGCCGATGAGTCGCATGTTGTCGTTTAAGAGGATGCTTAGTAGGGAATGGAAAGGGAGCGTTGTTTCTCCGTCGTCTTGTGGTGGTGGTGGTGGTTGTAGCTCGGTGGGTGAGGTGAACTCGAAGGTGGAACACGGTGGACAAGGTGAGACTCAGTGA 894 0.5067 MDKNDDPTIPNFNNESPNIPNNFDSKSYNLSGKIMLCAIVLLFFVIVLMLCLHLYARWYLVQSRRRRNRLRRRSQLVFFTDNPTTTISVTTSRGLDGSVIAKLPLFLYDPETHPHPENAMECAVCLSEFEPGETGRVLPKCNHSFHTECIDMWFHSHSTCPLCRAPVETTFEPQPEVVITVSEAESGSGSGSSHGSVLEDENLNRTGKEICSSSVGLRRKPSFTGVTIEVPTRNEESCDSPSSFRSPMSRMLSFKRMLSREWKGSVVSPSSCGGGGGCSSVGEVNSKVEHGGQGETQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02730 297 SMART ring_2 122 163 IPR001841 -
Vivi4g02730 297 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Vivi4g02730 297 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 169 IPR044675 -
Vivi4g02730 297 SMART FANCL_C_2 118 172 - -
Vivi4g02730 297 Pfam Ring finger domain 121 164 IPR001841 -
Vivi4g02730 297 CDD RING-H2_EL5-like 121 164 - -
Vivi4g02730 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 170 IPR013083 -
Vivi4g02730 297 MobiDBLite consensus disorder prediction 265 297 - -
Vivi4g02730 297 FunFam E3 ubiquitin-protein ligase ATL6 84 170 - -
Vivi4g02730 297 SUPERFAMILY RING/U-box 105 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02730 Vivi-Chr4 130149814 130151149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02730 1 293 Rapid Response to Elicitors AT3G16720 47.531 1.75e-68 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02730 - - lja:Lj6g3v1468220.1 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02730 4 130149814 130151149 Vivi4g02730 4 130149814 130151149 ECH
Vivi1g01121 1 23649698 23650582 Vivi4g02730 4 130149814 130151149 PCT