Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02655 ATGTTTAACCTCAATAGAACCCTAATATATCTCAAGGGATTAACTCCACTATCCCCAAACCCTATTCCTCTTCTCCACCACTACCCATCACCATTTTCTCTGCATTTCTGCACCAACACTTTCGATTCAACCTCATTTGCCGCCTCCTACCTCACCCAGAATTTCGGTTTCTCCCCACAATCTGCTTCCAAACTTTGCTCCACCCACCGTCTCCGATTCAAAACCTCCCAAAAACCTGACACTGTTCTCAACCTCTTCAAAAACCACGGTTTTTCAGACTCCCAACTTCACAGCATGATTGCAAAGGCACCCGGCTTACTTTCCTGCAACCCCTCCAAAAGGATCTTACCAAAGTTTCAATTTTTACTCTCCAAAGCTGCTTCTAACTCCGACATTGTTAACCTTGTCAGTAAGAACCCTAGAGTCTTGTCTCCTAGCTTGAAGAATCATATAGTCCCAACCTATGAATTGATTTATAGATTCTTGCAATCAGACAAGGACGTTATTGCTTCTGCAATTCAGAATACAGACTTACTCTGTGCTCATCGTGTGCGACGGAACATCACAATGCTGATTGAGAATGGAGTGTCGGACTCGAATATTGCAAGATTGCTCAGGATTCGGAGTTGGATATTAAGCGCACGCGACATGCTGAAGTTTGTGGAGGAAGTGAAGAATTTGGGGTTTAATCCTTCGAAAATAAACTTCTCGATAGCATTGATTGCCAAAATACCGGTAAGCAAAAACTTGTGGCAGGAAAAAGTTGAAACCTTTAAGAAGTGGGGTTGGTCGGATGAAGATGCTCTGGAAGCATTTAGAAAGAAACCTTATTGTATGTTAACATCCATTGATAAAATAAATTTAGTGATGAGCTTTTGGGTGAATCAGTTGGGTTGGGATGCTATGGCCATTGCGAAAACACCATATGTTTTATCGTTAAGTTTGGAAAAAAGGATCATTCCGAGGGCCGCTGTTGTGCAATATCTTCTCGGTAAAGGTTTGACGAAAAAGAGTGCAAGCTTAACTAGTCCATTTGTAGTGTCCGAGAAGATGTTTCTGGATAAGTTTGTAAAACGTTTTAAGAAAGAGTCTTCTTATCTATTAAAGTTGTATGAGGAAAAACTCAATCCTGCGTACACTAGGGATGATAAGACATGCATGCCCTAA 1167 0.413 MFNLNRTLIYLKGLTPLSPNPIPLLHHYPSPFSLHFCTNTFDSTSFAASYLTQNFGFSPQSASKLCSTHRLRFKTSQKPDTVLNLFKNHGFSDSQLHSMIAKAPGLLSCNPSKRILPKFQFLLSKAASNSDIVNLVSKNPRVLSPSLKNHIVPTYELIYRFLQSDKDVIASAIQNTDLLCAHRVRRNITMLIENGVSDSNIARLLRIRSWILSARDMLKFVEEVKNLGFNPSKINFSIALIAKIPVSKNLWQEKVETFKKWGWSDEDALEAFRKKPYCMLTSIDKINLVMSFWVNQLGWDAMAIAKTPYVLSLSLEKRIIPRAAVVQYLLGKGLTKKSASLTSPFVVSEKMFLDKFVKRFKKESSYLLKLYEEKLNPAYTRDDKTCMP 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02655 388 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Vivi4g02655 388 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Vivi4g02655 388 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Vivi4g02655 388 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Vivi4g02655 388 PANTHER CGI-12 PROTEIN-RELATED 44 361 IPR003690 GO:0003690|GO:0006355
Vivi4g02655 388 Gene3D Transcription termination factor 3, mitochondrial 162 366 IPR038538 -
Vivi4g02655 388 Pfam mTERF 246 352 IPR003690 GO:0003690|GO:0006355
Vivi4g02655 388 Pfam mTERF 83 234 IPR003690 GO:0003690|GO:0006355
Vivi4g02655 388 FunFam Mitochondrial transcription termination factor-like 147 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02655 Vivi-Chr4 127811125 127812291 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi4g02655 mTERF 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02655 K15031 - gmx:102663414 396.356