Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02647 ATGCATCGGATTCCGTTTTCTCCGTCCACCGCCGGCAGGAATAGATTCAAGGTAACACAAATTATCCTATTCAATTTCCATTTTCCGTTGCTTTCAATTTTCACCATGTTCAACTTCATTACATGCCGCCACAAAACCCTAATCCATCTCAAACCCTTAACTTCCCCACAAACATCACCGTTTTCTCCCCATTTTTCCACCAACACTTCCGACTCAACCTCATTTGCAGTCTCCTACCTCATCCACAACTTTGGTTTCTCTCCACAATTTGCTTCCAAACTCTGCTCCACTTACAATGTTAAATTCAAGACCACCCAAAAACCTGATTCAGTTCTCAACTTCTTTAGAAACCACGGTTTCTCAGAACCCCAACTACGCGATTTGATTGCAAAGGGACCCTATCTCCTTTCCTGCAATCCATCCAAAACGGTGTTGCCAAAGTTTCAATTTTTTCTCTCCAAAGGCGCCTCTTACTCCGACATTGTTAAACTTGTCACTAAAACACCCCGTGTTTTATCTCCAAGCCTCAAGAATCAAATTGTCCCAACCTATGAATTGACACATAGATTCCTTCAATCCGACAAGGACACTATTGCTTGTGCTGTTCACAATCCAACTTTACTTAGTCACCCTCAAGTGTCGCGTAACATTAGAATCTTAATTGAGAACGGAGTGCTAGACTCTAGCATTGCAAGATTGCTTCAGAGGCGGCCTCGGATATTGGATACACCTGACATGTTGGAGCTGGTGGAGGAATTAAAGAATTTGGGTTTTAATCCTTCAAAACCAGCCTTTGGTGTAGCATTGGCTGCAAAAATAACAGTAACCAAAACTCGGTGGAAAGAGAAAGTCGATGCCTATAAGAAATGGGGCTGGTCGGATGAAAATGTTCTCGACGCATTTAAAAGGCAGCCTAAATGTATGTTAGTATCCATTGCTAAAATTAATTCAGTCATGAGTTTTTGGGTCAATCAGTTGGGTTGGGATGCTCTCGCCCTTACCAAAGGACCAACAATTTTTTCGTTAAGTTTGAAAAAAAGGATCATTCCGATGGCACATGTACTGCAATTTCTGATGGAGAAAGGTTTGCGAAAAAAGAATGCTAGCTTAACTTCTCCATTTATGGTGCCTGAGAAATATTTCCGTGATATGTTTATAAAACGTTTTGACGAATCTTCTTATATATTAAAGTTGTACGAGGAAAAACGCAATCTTGCATGCACAGCTGAGAAAACTTGCATGTGA 1245 0.4096 MHRIPFSPSTAGRNRFKVTQIILFNFHFPLLSIFTMFNFITCRHKTLIHLKPLTSPQTSPFSPHFSTNTSDSTSFAVSYLIHNFGFSPQFASKLCSTYNVKFKTTQKPDSVLNFFRNHGFSEPQLRDLIAKGPYLLSCNPSKTVLPKFQFFLSKGASYSDIVKLVTKTPRVLSPSLKNQIVPTYELTHRFLQSDKDTIACAVHNPTLLSHPQVSRNIRILIENGVLDSSIARLLQRRPRILDTPDMLELVEELKNLGFNPSKPAFGVALAAKITVTKTRWKEKVDAYKKWGWSDENVLDAFKRQPKCMLVSIAKINSVMSFWVNQLGWDALALTKGPTIFSLSLKKRIIPMAHVLQFLMEKGLRKKNASLTSPFMVPEKYFRDMFIKRFDESSYILKLYEEKRNLACTAEKTCM 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02647 414 SMART mt_12 298 329 IPR003690 GO:0003690|GO:0006355
Vivi4g02647 414 SMART mt_12 330 364 IPR003690 GO:0003690|GO:0006355
Vivi4g02647 414 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Vivi4g02647 414 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Vivi4g02647 414 SMART mt_12 231 259 IPR003690 GO:0003690|GO:0006355
Vivi4g02647 414 FunFam Mitochondrial transcription termination factor-like 176 393 - -
Vivi4g02647 414 Pfam mTERF 112 259 IPR003690 GO:0003690|GO:0006355
Vivi4g02647 414 Pfam mTERF 274 381 IPR003690 GO:0003690|GO:0006355
Vivi4g02647 414 Gene3D Transcription termination factor 3, mitochondrial 175 392 IPR038538 -
Vivi4g02647 414 PANTHER CGI-12 PROTEIN-RELATED 72 388 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02647 Vivi-Chr4 127591791 127594307 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi4g02647 mTERF 4.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02647 K15031 - gmx:102663414 378.252