Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02646 ATGTCCATAAGTTTGCATGTGGTTCAGTCAGGCCCAACAACACTGTTTTCAATCTTCTTAGCAATCCTCCTTCTACCCATATCATGTAATGATTTAGATCAAAAGTATTTCATTCTAGTGAACCAATGCAAATTCAGAGTATGGCCAGCTTCCTTTTCTACCGCTCAAAACACAACTCTTGAAACCAACCACTTTAGTTTAAAAATGTGGGACAGGTCCACTGTTTGGGCTCCTCCAACTTGGAACGGCCACGTTTGGGGCCGAACTCTCTGCAGAACTAATTCAGCCACAGGAGGGAACTTCTCATGCATTACTGGCGATTGCGGTACTGGCAAGCAATCATGTGATGGAATGCGAGACATGCCCCCTGCCACACTAGCAGAATTCCGTCTAGGAAAAAATGGTCTTGTTTTTTATAATGTTGATGTTGTAGAAGGTTTCAATATCCCCATAGTGGTGGTTCCTATTGGTGTTTCTGGTGAGAACGTGAATTGTAGCACTGCAGGTTGCCTTACAAACATTAATAATATGTGTGCAAAAGACAATGGGACAAACACATTTACTTGTTCAACTAATTTGTATAAGATCATATTTTGCCCAGCTTCCAGCATGGGACTTTTCGATCAAAGTGTGAGTGTAGACGACTCATTCACTGCTGGCAATGGGACAAATCAGTTGCTCTCTTCTTCGAGAGAGTTTGCTTTTGGTACTTTGATCATTGTCATTTTAATTATTTTGGGATTCTCCATCGCTATAGTTATAACATTGGTTGGCGCAATTTTTTATTGGTACAACTCAAAGAAGATAAAAAGTAGCACAACCAACAAAAAAGTTGTTGATAGAAATTTGAGAATTTTTTCTTTCAAGGAAATTACAAAAGTAACAAACAATTTTAGGGAAGAATTAGGAAGAGGGTCTTGTAGCATTGTATACAAAGGAAAGGTAGATGTGGATACTTGTGTCGCGGTTAAAAAATTGGACAAGTTATTTCAAGATAGTGATAAGGAATTTCAAACTGAAATGAATGTGATAATCAAAACTCATCATAGGAACCTTGTGCGTCTTCATGGGTATTGTAGTGAAGATCAACACAGGATTTTGGTGTATGAGTTAATGAGTAATGGTACTTTAGCAAGATTTCTTTTCACACCTTTGAAACCAAACTGGAACCAACGAGTTCATATTATCATTGGGATTGCAAGAGGTCTTGTTTACTTGCATGAAGAATGTTGCACCCAAATAATTCACTGTGACATAAAGCCACAAAACATCCTTCTTGATGATGACTACAATGCCAAGATTTCAGATTTTGGGTTAGCAAAACTATTATTGATTAATCAAAGTCACACAAAAACCGGAATCAGAGGAACCAAAGGTTATGTTGCACCAGATTGGTTTAGGAGTGCACCTATCACTTCTAAGGTTGATACTTTTAGTTTTGGAGTGTTGTTACTAGAGATTATTTGTTCTAGGAAAAATATAGAGGATGATACTGTTAGTGAAGAAAAAAGAATTTTAATTGATTGGGCATATGATTGCTACAAGACTGGTAGAATGGATATTCTTTTAGAAAATGAATATGAGGCTGACAAAGATATGAGTAGATTTGAAAAATTTGTCATGATTTCTATTTGGTGCACTCAAGAAGATCCATCTCTAAGGCCACCAATGAAGAAGGTGTTGTTAATGCTAGAAGGGATTGTTGAAGTTGAAATTCCTCCAAATCCCTACTTGTATGGTTCTTCTAATCAAAGTTAG 1758 0.3714 MSISLHVVQSGPTTLFSIFLAILLLPISCNDLDQKYFILVNQCKFRVWPASFSTAQNTTLETNHFSLKMWDRSTVWAPPTWNGHVWGRTLCRTNSATGGNFSCITGDCGTGKQSCDGMRDMPPATLAEFRLGKNGLVFYNVDVVEGFNIPIVVVPIGVSGENVNCSTAGCLTNINNMCAKDNGTNTFTCSTNLYKIIFCPASSMGLFDQSVSVDDSFTAGNGTNQLLSSSREFAFGTLIIVILIILGFSIAIVITLVGAIFYWYNSKKIKSSTTNKKVVDRNLRIFSFKEITKVTNNFREELGRGSCSIVYKGKVDVDTCVAVKKLDKLFQDSDKEFQTEMNVIIKTHHRNLVRLHGYCSEDQHRILVYELMSNGTLARFLFTPLKPNWNQRVHIIIGIARGLVYLHEECCTQIIHCDIKPQNILLDDDYNAKISDFGLAKLLLINQSHTKTGIRGTKGYVAPDWFRSAPITSKVDTFSFGVLLLEIICSRKNIEDDTVSEEKRILIDWAYDCYKTGRMDILLENEYEADKDMSRFEKFVMISIWCTQEDPSLRPPMKKVLLMLEGIVEVEIPPNPYLYGSSNQS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02646 585 SUPERFAMILY Osmotin, thaumatin-like protein 36 200 IPR037176 -
Vivi4g02646 585 SUPERFAMILY Protein kinase-like (PK-like) 282 576 IPR011009 -
Vivi4g02646 585 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 372 572 - -
Vivi4g02646 585 FunFam S-receptor-like serine/threonine-protein kinase 265 371 - -
Vivi4g02646 585 Gene3D Transferase(Phosphotransferase) domain 1 372 572 - -
Vivi4g02646 585 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Vivi4g02646 585 Gene3D Thaumatin 36 200 IPR037176 -
Vivi4g02646 585 Gene3D Phosphorylase Kinase; domain 1 260 371 - -
Vivi4g02646 585 ProSitePatterns Thaumatin family signature. 99 115 IPR017949 -
Vivi4g02646 585 ProSiteProfiles Protein kinase domain profile. 296 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02646 585 SMART tha2 37 200 IPR001938 -
Vivi4g02646 585 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 36 575 - -
Vivi4g02646 585 SMART serkin_6 296 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02646 585 CDD STKc_IRAK 302 567 - -
Vivi4g02646 585 PRINTS Pathogenesis-related protein signature 84 95 IPR001938 -
Vivi4g02646 585 PRINTS Pathogenesis-related protein signature 137 153 IPR001938 -
Vivi4g02646 585 PRINTS Pathogenesis-related protein signature 36 48 IPR001938 -
Vivi4g02646 585 PRINTS Pathogenesis-related protein signature 190 199 IPR001938 -
Vivi4g02646 585 Pfam Thaumatin family 41 181 IPR001938 -
Vivi4g02646 585 ProSiteProfiles Thaumatin family profile. 37 200 IPR001938 -
Vivi4g02646 585 Pfam Protein kinase domain 299 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02646 Vivi-Chr4 127587677 127590914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02646 16 579 Receptor kinase-like Gene Family AT5G38280 33.803 9.59e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi4g02646 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02646 - - vvo:131595175 1167.91