Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02643 ATGTTCAAAGCATTGCTACACCCCAATGATTCCGCCATATCAACAACCTCAAGAATACTCTGCAACTTGCATTTCCCATTTGCTCACAAATTCCTCACCACAACCACCACCACTTCACCCTCATTCGCTGTCTCCTACTTCATCAACAACCTCAAATTCTCATCAGAATCCGCTCTCAAAGCCTCCAAACTCGTCCATTTCAAAACCTCAAAAAAACCCGACTCAGTCCTCAGCTTCTTCAGAACCCACGGTTTCGCCGATTCAGATATACACAAAATCATCCAAAGGGAGCCCTGGCTTCTTTCCTGCAACACCCAGAAAAGGGTTCTCCCAAAGTTTCAATTTTTACTCTCCAAAGGCGCTTCTACCTCTGATATCGTCCGCATCGTTGTAGGTAACCCTAGATTCATGAAATCCAGCTTGAATAATCGTGTTATCCCTGTTTATAATTTGGTAACTCAATATCTTCAATCCGATGAAAAGACTATTGCTTCAGTAATTTCATGTCCTTCTTTGCTTTGTAGTGATTATCTTGCTCCTAATGTCAATATGATGGTTGAGAATGGTGTTTGCTATTCTAGCATTTATAGGATTCTTCGTACTAGACCGAATGTTATCTTTTGTAGACCTAGAGAGTTGAAGGAGACGGTGGAGGAATTGAAAAACATGGGATTTGATCCTTCTAAATCGTATTTCGGTGATGCATTGCTCGGGAAAATAGGTTTAAGTAAATCAAAATGGAATGAGAGAATTGAGACCTTCAAGAGTTGGGGTTGGTCTGAGGAAACTGTTTTGGAAGCTATTAAGAGGCAGCCGAAATGTATGTTAGCGTCGAACGATAAAATCAATAGGGTGATGAGTTTTTGGGTTAATGAGATGGATTGGGATTCTTCTTATCTAGTCAAGGGACCAGGGATGTTTGGTTATTGTTTGGAGAAAAGGATCATTCCAAGAGCTATGGTTATTTTTTATCTTCTAGCTAAGGGTTTGAGAAGCGAAAAGGCTAGCTTGCTTTCTCCGTTTTATATGTCTGAGAAATTGTTTTTGGAAAAATATGTGTTACGTTTTAGAGAGGAGGAAACTTCTCATCTATTGAAGTTATATCATGGAATGATGAAGCTGGGAGATAAGAAGGCAAGGGACATAGAAGAGTCATGA 1158 0.3998 MFKALLHPNDSAISTTSRILCNLHFPFAHKFLTTTTTTSPSFAVSYFINNLKFSSESALKASKLVHFKTSKKPDSVLSFFRTHGFADSDIHKIIQREPWLLSCNTQKRVLPKFQFLLSKGASTSDIVRIVVGNPRFMKSSLNNRVIPVYNLVTQYLQSDEKTIASVISCPSLLCSDYLAPNVNMMVENGVCYSSIYRILRTRPNVIFCRPRELKETVEELKNMGFDPSKSYFGDALLGKIGLSKSKWNERIETFKSWGWSEETVLEAIKRQPKCMLASNDKINRVMSFWVNEMDWDSSYLVKGPGMFGYCLEKRIIPRAMVIFYLLAKGLRSEKASLLSPFYMSEKLFLEKYVLRFREEETSHLLKLYHGMMKLGDKKARDIEES 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02643 385 PANTHER CGI-12 PROTEIN-RELATED 39 355 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 Gene3D Transcription termination factor 3, mitochondrial 145 360 IPR038538 -
Vivi4g02643 385 FunFam Mitochondrial transcription termination factor-like 141 360 - -
Vivi4g02643 385 Pfam mTERF 240 348 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 Pfam mTERF 77 226 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 SMART mt_12 127 159 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 SMART mt_12 196 226 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 SMART mt_12 297 331 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Vivi4g02643 385 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02643 Vivi-Chr4 127542140 127544637 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vivi4g02643 mTERF 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02643 K15031 - gmx:102667698 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02643 4 127542140 127544637 Vivi4g02643 4 127542140 127544637 ECH