Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02637 ATGGATCCTGTAAGAGGTGTGGGTAGTGTTGTGGGGACTGTGCTGATTCCCATGCGGTTTGTGTGGCCTTATGGTGGTAGGAGTGTTTTTCTCAGTGGTTCTTTCACAAGGTGGTCTGAACTTTTGCCAATGTCTCCGGTGGAAGGTTGTCCAACAGTGTTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGGGAGTGGCGGCATGATGAGCATCAACCTTATGTACACGGACAATATGGGATAGTCAACACTGTCTTATTGGCAACTGATCCTAACTACATACCTGTTATAAATTTAGACATTGCTCCTGGTAGTAACATGGACGTGGATGAGACTTTTCGCCGCGCGGTTCAGGTGACAGAAGGTACATTGAGTGAGGTGCTTCCAAGAATATCAGATGCTGATGTACAGGTCTCTCGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCATTGGATGTTGATTTACCAGTGAAACAAGCATTTCATATATTGCATGAGCAGGGAATATACATGGCTCCTCTGTGGGACATGTGCAAGGGACAGTTTGTTGGTGTTCTCAGTGCTTTGGATTTCGTCTTAATTTTAAGGGAGTTAGGGAATCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAATCATATCTAAACAGACAGAACAATGGACATGGAATTGCATTTTCTAGGCATCTTATTCACGCAGGACCGTATGATAATCTGAAAGACATTGCCATTAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTTTGAAGATGGTTCTTTTCCGCAGTTACTTCATCTTGCTTCACTGTCAGGAATACTCAAATGCATTTGTAGGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTGCAACTTCCAATATGTGCAATACCTGTTGGCACATGGGTGCCCAAAATCGGGGAATCAAACCGGCGGCCTCTAGCAGTATTGAGACCGAGCTCTTCTCTTGCTTCAGCGCTAAATTTATTAGTTCAAGCACAAGCAAGTTCAATACCAATTGTTGATGATAATGACTCATTGCTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCATATACACATATCAATCTTGATGAAATGACCGTTCAACAGGCTTTACAGTTAGGCCACGATGTGTGTAATCCCTACGAGCCTAGAAGTCAAAGATGTCAAATGTGTTTACGTTCTGATTCACTGCATAAAGTGATCGAGCGTTTGGCAAATCCAGGTGTGAGGAGGATTGTTATTGTAGAAGCTGGCAGTAAGCGTTTAGAAGGCATCGTCTCATTGAGCGACATATTCAAGTTCTTTCTCAGTTAA 1455 0.4241 MDPVRGVGSVVGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDEHQPYVHGQYGIVNTVLLATDPNYIPVINLDIAPGSNMDVDETFRRAVQVTEGTLSEVLPRISDADVQVSRQRISAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDMCKGQFVGVLSALDFVLILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGHGIAFSRHLIHAGPYDNLKDIAIKILQKEVSTVPIIHSSFEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGHDVCNPYEPRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDIFKFFLS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02637 484 Gene3D - 340 484 IPR046342 -
Vivi4g02637 484 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Vivi4g02637 484 Gene3D Immunoglobulins 16 108 IPR013783 -
Vivi4g02637 484 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 144 482 - -
Vivi4g02637 484 SMART cbs_1 434 483 IPR000644 -
Vivi4g02637 484 SMART cbs_1 352 400 IPR000644 -
Vivi4g02637 484 SMART cbs_1 170 219 IPR000644 -
Vivi4g02637 484 Pfam CBS domain 350 397 IPR000644 -
Vivi4g02637 484 Pfam CBS domain 436 482 IPR000644 -
Vivi4g02637 484 ProSiteProfiles CBS domain profile. 348 405 IPR000644 -
Vivi4g02637 484 SUPERFAMILY E set domains 16 97 IPR014756 -
Vivi4g02637 484 ProSiteProfiles CBS domain profile. 164 226 IPR000644 -
Vivi4g02637 484 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Vivi4g02637 484 ProSiteProfiles CBS domain profile. 431 484 IPR000644 -
Vivi4g02637 484 SUPERFAMILY CBS-domain pair 151 321 IPR046342 -
Vivi4g02637 484 CDD E_set_AMPKbeta_like_N 17 95 - -
Vivi4g02637 484 Gene3D - 141 324 IPR046342 -
Vivi4g02637 484 SUPERFAMILY CBS-domain pair 348 483 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02637 Vivi-Chr4 127206361 127216213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02637 12 130 Protein tyrosine phosphatase (PTP) family AT3G01510 27.869 2.53e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02637 - - gmx:100785692 833.558