Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02636 ATGGATCCTGTAAGAGGTGTGGGTAGTGTTGTGGGGACTGTGCTGATTCCCATGCGGTTTGTGTGGCCTTATGGTGGTAGGAGTGTTTTTCTCAGTGGTTCTTTCACAAGGTGGTCTGAACTTTTGCCAATGTCTCCGGTGGAAGGTTGTCCAACAGTGTTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGGGAGTGGCGGCATGATGAGCATCAACCTTATGTACACGGACAATATGGGATAGTCAACACTGTCTTATTGGCAACTGATCCTAACTACATACCTGTTATAAATTTAGACATTGCTCCTGGTAGTAACATGGACGTGGATGAGACTTTTCGCCGCGCGGTAACAGTTCAGGTGACAGAAGGTACATTGAGTGAGGTGCTTCCAAGAATATCAGATGCTGATGTACAGGTCTCTCGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCATTGGATGTTGATTTACCAGTGAAACAAGCATTTCATATATTGCATGAGCAGGGAATATACATGGCTCCTCTGTGGGACATGTGCAAGGGACAGTTTGTTGGTGTTCTCAGTGCTTTGGATTTCGTCTTAATTTTAAGGGAGTTAGGGAATCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAATCATATCTAAACAGACAGAACAATGGACATGGAATTGCATTTTCTAGGCATCTTATTCACGCAGGACCGTATGATAATCTGAAAGACATTGCCATTAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTTTGAAGATGGTTCTTTTCCGCAGTTACTTCATCTTGCTTCACTGTCAGGAATACTCAAATGCATTTGTAGGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTGCAACTTCCAATATGTGCAATACCTGTTGGCACATGGGTGCCCAAAATCGGGGAATCAAACCGGCGGCCTCTAGCAGTATTGAGACCGAGCTCTTCTCTTGCTTCAGCGCTAAATTTATTAGTTCAAGCACAAGCAAGTTCAATACCAATTGTTGATGATAATGACTCATTGCTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCATATACACATATCAATCTTGATGAAATGACCGTTCAACAGGCTTTACAGTTAGGCCACGATGTGTGTAATCCCTACGAGCCTAGAAGTCAAAGATGTCAAATGTGTTTACGTTCTGATTCACTGCATAAAGTGATCGAGCGTTTGGCAAATCCAGGTGTGAGGAGGATTGTTATTGTAGAAGCTGGCAGTAAGCGTTTAGAAGGCATCGTCTCATTGAGCGACATATTCAAGTTCTTTCTCAGTTAA 1461 0.4237 MDPVRGVGSVVGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDEHQPYVHGQYGIVNTVLLATDPNYIPVINLDIAPGSNMDVDETFRRAVTVQVTEGTLSEVLPRISDADVQVSRQRISAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDMCKGQFVGVLSALDFVLILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGHGIAFSRHLIHAGPYDNLKDIAIKILQKEVSTVPIIHSSFEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGHDVCNPYEPRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDIFKFFLS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02636 486 SMART cbs_1 172 221 IPR000644 -
Vivi4g02636 486 SMART cbs_1 354 402 IPR000644 -
Vivi4g02636 486 SMART cbs_1 436 485 IPR000644 -
Vivi4g02636 486 ProSiteProfiles CBS domain profile. 350 407 IPR000644 -
Vivi4g02636 486 SUPERFAMILY CBS-domain pair 153 323 IPR046342 -
Vivi4g02636 486 Gene3D - 143 326 IPR046342 -
Vivi4g02636 486 ProSiteProfiles CBS domain profile. 433 486 IPR000644 -
Vivi4g02636 486 Pfam CBS domain 438 484 IPR000644 -
Vivi4g02636 486 Pfam CBS domain 352 399 IPR000644 -
Vivi4g02636 486 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Vivi4g02636 486 SUPERFAMILY E set domains 16 97 IPR014756 -
Vivi4g02636 486 Gene3D - 342 486 IPR046342 -
Vivi4g02636 486 Gene3D Immunoglobulins 16 108 IPR013783 -
Vivi4g02636 486 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Vivi4g02636 486 ProSiteProfiles CBS domain profile. 166 228 IPR000644 -
Vivi4g02636 486 SUPERFAMILY CBS-domain pair 350 485 IPR046342 -
Vivi4g02636 486 CDD E_set_AMPKbeta_like_N 17 95 - -
Vivi4g02636 486 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 146 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02636 Vivi-Chr4 127206360 127216213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02636 8 127 Protein tyrosine phosphatase (PTP) family AT3G01510 28.455 1.96e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02636 - - gmx:100785692 828.55