Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02635 ATGGATCCTGTAAGAGGTGTGGGTAGTGTTGTGGGGACTGTGCTGATTCCCATGCGGTTTGTGTGGCCTTATGGTGGTAGGAGTGTTTTTCTCAGTGGTTCTTTCACAAGGTGGTCTGAACTTTTGCCAATGTCTCCGGTGGAAGGTTGTCCAACAGTGTTTCAAGTTATTTATAGATTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGGGAGTGGCGGCATGATGAGCATCAACCTTATGTACACGGACAATATGGGATAGTCAACACTGTCTTATTGGCAACTGATCCTAACTACATACCTGTTATAAATTTAGACATTGCTCCTGGTAGTAACATGGACGTGGATGAGACTTTTCGCCGCGCGGTAACACAGGTTCAGGTGACAGAAGGTACATTGAGTGAGGTGCTTCCAAGAATATCAGATGCTGATGTACAGGTCTCTCGTCAGCGTATTTCTGCATTTCTGTCTATGCACACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCATTGGATGTTGATTTACCAGTGAAACAAGCATTTCATATATTGCATGAGCAGGGAATATACATGGCTCCTCTGTGGGACATGTGCAAGGGACAGTTTGTTGGTGTTCTCAGTGCTTTGGATTTCGTCTTAATTTTAAGGGAGTTAGGGAATCGTGGGTCTAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCGGCTTGGAAAGAAGGAAAATCATATCTAAACAGACAGAACAATGGACATGGAATTGCATTTTCTAGGCATCTTATTCACGCAGGACCGTATGATAATCTGAAAGACATTGCCATTAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTTTGAAGATGGTTCTTTTCCGCAGTTACTTCATCTTGCTTCACTGTCAGGAATACTCAAATGCATTTGTAGGTATTTTAGGAATTGCTCTAGTTCATTGCCTATACTGCAACTTCCAATATGTGCAATACCTGTTGGCACATGGGTGCCCAAAATCGGGGAATCAAACCGGCGGCCTCTAGCAGTATTGAGACCGAGCTCTTCTCTTGCTTCAGCGCTAAATTTATTAGTTCAAGCACAAGCAAGTTCAATACCAATTGTTGATGATAATGACTCATTGCTGGATATATATTGTCGGAGTGATATAATGGCTTTGGCAAAGGACAGGGCATATACACATATCAATCTTGATGAAATGACCGTTCAACAGGCTTTACAGTTAGGCCACGATGTGTGTAATCCCTACGAGCCTAGAAGTCAAAGATGTCAAATGTGTTTACGTTCTGATTCACTGCATAAAGTGATCGAGCGTTTGGCAAATCCAGGTGTGAGGAGGATTGTTATTGTAGAAGCTGGCAGTAAGCGTTTAGAAGGCATCGTCTCATTGAGCGACATATTCAAGTTCTTTCTCAGTTAA 1464 0.4242 MDPVRGVGSVVGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYRLPPGYHQYKFFVDGEWRHDEHQPYVHGQYGIVNTVLLATDPNYIPVINLDIAPGSNMDVDETFRRAVTQVQVTEGTLSEVLPRISDADVQVSRQRISAFLSMHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIYMAPLWDMCKGQFVGVLSALDFVLILRELGNRGSNLTEEELETHTISAWKEGKSYLNRQNNGHGIAFSRHLIHAGPYDNLKDIAIKILQKEVSTVPIIHSSFEDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRPLAVLRPSSSLASALNLLVQAQASSIPIVDDNDSLLDIYCRSDIMALAKDRAYTHINLDEMTVQQALQLGHDVCNPYEPRSQRCQMCLRSDSLHKVIERLANPGVRRIVIVEAGSKRLEGIVSLSDIFKFFLS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02635 487 Gene3D Immunoglobulins 16 108 IPR013783 -
Vivi4g02635 487 ProSiteProfiles CBS domain profile. 434 487 IPR000644 -
Vivi4g02635 487 SMART cbs_1 355 403 IPR000644 -
Vivi4g02635 487 SMART cbs_1 173 222 IPR000644 -
Vivi4g02635 487 SMART cbs_1 437 486 IPR000644 -
Vivi4g02635 487 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Vivi4g02635 487 SUPERFAMILY E set domains 16 97 IPR014756 -
Vivi4g02635 487 Gene3D - 144 327 IPR046342 -
Vivi4g02635 487 Pfam CBS domain 439 485 IPR000644 -
Vivi4g02635 487 Pfam CBS domain 353 400 IPR000644 -
Vivi4g02635 487 Gene3D - 343 487 IPR046342 -
Vivi4g02635 487 ProSiteProfiles CBS domain profile. 351 408 IPR000644 -
Vivi4g02635 487 ProSiteProfiles CBS domain profile. 167 229 IPR000644 -
Vivi4g02635 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 147 485 - -
Vivi4g02635 487 Pfam Glycogen recognition site of AMP-activated protein kinase 16 98 IPR032640 -
Vivi4g02635 487 SUPERFAMILY CBS-domain pair 154 324 IPR046342 -
Vivi4g02635 487 SUPERFAMILY CBS-domain pair 351 486 IPR046342 -
Vivi4g02635 487 CDD E_set_AMPKbeta_like_N 17 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02635 Vivi-Chr4 127206359 127216213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02635 12 130 Protein tyrosine phosphatase (PTP) family AT3G01510 27.869 9.94e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02635 - - gmx:100785692 828.55