Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02625 ATGGAATCACCGGTTGATTTTTTACTTGCTAAACGCAAAGCTTCAACTGGAACTTCATCTGAGGAAGGATGCAAAAAACCAAGGATATCAAGTGGCAGCTTGCCACATTCTCATGGTAATTTTGTAGGTGACAAAAATCAGCTTGCCATCTCGAATGTCATAGATTATTCAGAGAGCAGAAAATTTGGAAGCGTGACAAAGAATATTGAAGCCCTTATGGCCCAAAGAATGCAAATATTGGGCCCTTACATCCCAAAATATCCTAGACTTGCGAATCAATTAATGAAAGTTGTGACAGATCATGATGAAAAAACGCTCAACTCAGAAAATAAAAAAGTTAATGGTATGTCACCTCAAAATGCCATAGATTTGGATGGGGAGCACATTGAAAAGGATGTTTTGACACCAAGAAGAGAAAAGGATGTTCCAGCATCACCAACTGTTGTTGTTATCATTGATTCAGATGAGGAAGATGATAGGGATCAAAAATGTTTTCTTCCGTTTCAGCCTCCTGCATTAAAAATGATTGGCTATCATGCTCCCATTGCTTGTCATGGGGAAAGTGTAGATCTAAAATTTGAAGCAAGTCCGCATCCTAAAGATAACACATGGAAAGATGAAGGTTTTTATGTTGATGCACGTGAGGAAGAAGATACTAAGGTTGATGCTGAAACAAGTCTGCCTCCTAAAGATAACACAAGGAAAGTTAAAGGTGTTCATGTTGATGTACACGGGGAAGAAGATGACAAGGTTGATGCTGAAACAAGTCTACCTCCTAAAGATAACACAAGGAAAGATGAATGTGTTTATGTTGGTGTACATGAGGAAAAAGATAAGAAGGCTGATGCTGAAACAAGTCTGCCTCCTAAAGATAACACAAGCAAATATAAAGGTGTTTATGTTGGCGTACATGAGGAAAAAGATAAGGCTGATGTTGAAACAAATCTTCCTCTTAAATATAACACAAGAAAATATAAAGGTGTTTATGTTGGTGTACACGAGGAAGAAGATACTAAGGTTGAAGCTGAAACAAGTCTGCCTCCTAAAGACAAAACAAGGAAAGATAAAGGTGTTTATGTCGGTGTACACGAGGAAGAAGATAATAAGGTTGATGCTGAAGATGAAAGGCTAGAAGATATTTGGAGGGAGATGTCTATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCATCTACCAGAAGAAGAAGAAGAAGAAAAGGATGCTGACTGTGATCACTCTTTTGTTTTAAAAGACGATCTGGGTTATGTTTGTCGTGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAGGAGCACAAGAACTTACATGTCCGAATCCTGGAATGCCAAAGCAAAAAATGATTTATTTGAAGCTAAGATTGCGGAAGATGATCTCATGGTAACGGAAATTTCAGCACATCCTAGGCATGCAAATCTAATGAAACTGCACCAAGTCGAAGGATTCAATTTTCTTGTCAGAAACCTGGTGGGGGACCATCCTGGAGGATGCATTCTGGCTCATGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATACAGAGTTTTCTAGGAAAGTATCCCAGTGCAAGGCCTCTAGTGGTGCTTCCTAAGGGAATACTGTCGACTTGGAAAAAAGAATTTCAGACATGGCAAGTGGAAGATGTACCACTCTATGACTTTTACACTGCGAAGGCTGAAAGTAGATCACAACAATTGGAAGTCTTAAAAAAATGGGTGGACCACAAGAGTATCCTTCTCTTAGGATACAGACAGTTCACTTCCATTGTCTGTGATGACTGCAATAACAATGTATCATTATCTTGCCAAGAGATATTGCTTAAGGTTCCCTCAATTCTCATTTTAGATGAGGGACATACTCCCAGGAACGAGACTACTGATACGGTACAGTCCCTTGCAAAAGTAAAAACACCAAGAAAAGTTGTACTGTCGGGAACCCTATATCAAAATCATGTCAAGGAGGTATTCAACGTGCTGAACCTTGTTCGCCCAAAGTTTAAATCGATGGAAACGTCCAAGCCTATTGTCCGACGCATTAAGAGTAGGATCCATCTACCTGGTGTGAATGACTTTTGTGATTTGATTGAAAACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAGTGGCTGTTATACATGATTTGCGGGAGATGACCAGTAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTAGATTTTACTGTGGTGCTCAAACTTACACCTAGACAGATGCATGAACTTGATAAAGTAAAAAGGATATCTGGAAAGTTCAAGATGGCTTCTGTAGGTAGTGCAGTATATCTGCACCCAAAATTGAAACCAGTTGCAGAGAAATGGGGTGAAAATTCTATATCTGATCATATAAGTGATGATCTAATAGCAAACCTAGATGTGAGAGATGGAGTTAAATTAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCAGCTGGGGAGAAGCTTTTGGTGTTCAGTCAATCTCTCTTGTCTTTAAAATGTTTGGAACGGTTAGCTATGAAATGGAAAGGCTGGAGTGTTGGCAAAGAAATTTTTGTAATTTCAGGAAAATCATCCACTGAAGAAAGAGAGTTTTCCATGGAAAAGTTCAACGGTTCACCTGAGGCGAAAATATTCTTTGGGTCAATTAAAGCATGTGGTGAGGGTATATCGTTGGTTGGGGCATCCCGTGTCATCATCTTGGATGTGCATTTGAACCCGTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAGGAAAGTGTTTGTGTATAGATTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACAATACTTGTTTCGAGAAGGAGTTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGCGGTGACAGAGCTTTTGAAGTTGAGACACTTGATGTGAAGGAATGTGGTGATATGTTTCTAGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCTCTGCATAAAAGGTGA 3066 0.3933 MESPVDFLLAKRKASTGTSSEEGCKKPRISSGSLPHSHGNFVGDKNQLAISNVIDYSESRKFGSVTKNIEALMAQRMQILGPYIPKYPRLANQLMKVVTDHDEKTLNSENKKVNGMSPQNAIDLDGEHIEKDVLTPRREKDVPASPTVVVIIDSDEEDDRDQKCFLPFQPPALKMIGYHAPIACHGESVDLKFEASPHPKDNTWKDEGFYVDAREEEDTKVDAETSLPPKDNTRKVKGVHVDVHGEEDDKVDAETSLPPKDNTRKDECVYVGVHEEKDKKADAETSLPPKDNTSKYKGVYVGVHEEKDKADVETNLPLKYNTRKYKGVYVGVHEEEDTKVEAETSLPPKDKTRKDKGVYVGVHEEEDNKVDAEDERLEDIWREMSMAIETSKDVSADHLPEEEEEEKDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSESWNAKAKNDLFEAKIAEDDLMVTEISAHPRHANLMKLHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMIISFIQSFLGKYPSARPLVVLPKGILSTWKKEFQTWQVEDVPLYDFYTAKAESRSQQLEVLKKWVDHKSILLLGYRQFTSIVCDDCNNNVSLSCQEILLKVPSILILDEGHTPRNETTDTVQSLAKVKTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFKSMETSKPIVRRIKSRIHLPGVNDFCDLIENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLKLTPRQMHELDKVKRISGKFKMASVGSAVYLHPKLKPVAEKWGENSISDHISDDLIANLDVRDGVKLKFFRNMLNLCESAGEKLLVFSQSLLSLKCLERLAMKWKGWSVGKEIFVISGKSSTEEREFSMEKFNGSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEEDHNTCFEKELISKMWFEWNEYCGDRAFEVETLDVKECGDMFLESPLLGEDVKALHKR 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02625 1021 Pfam Helicase conserved C-terminal domain 832 944 IPR001650 -
Vivi4g02625 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 702 IPR027417 -
Vivi4g02625 1021 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 42 1019 IPR044567 GO:0080188
Vivi4g02625 1021 SMART helicmild6 860 945 IPR001650 -
Vivi4g02625 1021 MobiDBLite consensus disorder prediction 244 264 - -
Vivi4g02625 1021 MobiDBLite consensus disorder prediction 11 40 - -
Vivi4g02625 1021 Gene3D - 756 1009 IPR027417 -
Vivi4g02625 1021 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 831 999 IPR001650 -
Vivi4g02625 1021 Gene3D - 457 702 IPR038718 -
Vivi4g02625 1021 CDD SF2_C_SNF 828 956 - -
Vivi4g02625 1021 Pfam SNF2-related domain 510 769 IPR000330 GO:0005524|GO:0140658
Vivi4g02625 1021 SMART ultradead3 486 696 IPR014001 -
Vivi4g02625 1021 MobiDBLite consensus disorder prediction 215 234 - -
Vivi4g02625 1021 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1005 IPR027417 -
Vivi4g02625 1021 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 504 683 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02625 Vivi-Chr4 126839966 126846029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02625 842 963 RAD5 or RAD16-like Gene Family AT5G43530 40.164 1.59e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi4g02625 SNF2_N 9.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02625 K10875 - gmx:100795356 1177.16