Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02573 ATGGGGAAAAATGACTTTCTCACACCTAAGGCAATTGCCAATCGAATTAAAGCAAAAGGACTGCAGAAGCTTCGGTGGTATTGCCAGATGTGTCAGAAGCAATGTCGTGATGAGAATGGTTTCAAATGCCACTGCATGAGTGAAGGGCACCAGCGTCAAATGCAAATTTTTGGACAAAATCCAACCCGCATAGTTGAGGGCTATACCGAAGAGTTTGAAACAACTTTTCTTGAGCACATGAAGCGCAGCCATCGATTCAGCCGTGTGGCTGCCACTGTTGTTTATAATGAATACATAAATGATAGAAACCACGTTCATATGAACTCCACAGAGTGGGCTACACTTACCGAGTTTGTTAAGTACTTGGGCCGAACTGGAAAGTGTAAGGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGATAGAGATTCAGAAACTCTTTTCAAAGAGAAGATGAAGAATAAGAGAATAAAGGCAGATTTGGTAGATGAAGAAAAACAAGAGAAAGAGATCCAAAAACAGATTGAAAGGGCCGAGCAATTGATGCAGCTATCTAATCCGGAGTCCGACCAACCTCATGTAGAGACTACGAGGGAACTAAATGCAGAAGACGGAATTAAGATAGGATTTTCTCTTGGGTCGTCTGCGAAACCTATCACCAAGGAAAAAGGTAACACATCGATGGGGGCATTTGATGAGGTTGATGCAGAGAAATACGAGGAAAGGAATCCTGTAAACAATTTGAAGAGGAAAGAAAGTGGTAGTGGAAAATCAACTTTAGATGAAATGATCAGGGAGGAAGAGAGGAAAAAGGAAAAAATCAACAGGAGGGATTATTGGTTACACGAGGGAATTGTTGTTAAGGTTATGAGCAAAGTCTTGGCTGAGAAGGGATACTACAAACAAAAAGGTGTTGTGAGAAAAGTGATTGACAAGTATGTAGGGGAAATAGAAATGCTAGAAAGCAAGCATGTGCTCAGAGTTGATCAGGAAGAGCTTGAAACGGTGATACCTCAGGTCGGGGGACGTGTAAAAATAGTAAACGGGGCTTATCGTGGATCACTTGCTAGACTGCTCGGAGTGGATACAGATCGTTTTTGCGCCAAGGTGCAGATAGAAAAAGGTGCTTATGATGGTAGAGTGCTTAAAGCCGTGGAGTACGAGGATATTTGTAAATTAGCCTAG 1191 0.4207 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPTRIVEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKADLVDEEKQEKEIQKQIERAEQLMQLSNPESDQPHVETTRELNAEDGIKIGFSLGSSAKPITKEKGNTSMGAFDEVDAEKYEERNPVNNLKRKESGSGKSTLDEMIREEERKKEKINRRDYWLHEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEMLESKHVLRVDQEELETVIPQVGGRVKIVNGAYRGSLARLLGVDTDRFCAKVQIEKGAYDGRVLKAVEYEDICKLA 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02573 396 Gene3D - 340 396 IPR014722 -
Vivi4g02573 396 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Vivi4g02573 396 Gene3D - 286 339 - -
Vivi4g02573 396 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
Vivi4g02573 396 Coils Coil 259 279 - -
Vivi4g02573 396 CDD KOW_KIN17 342 395 IPR041995 -
Vivi4g02573 396 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Vivi4g02573 396 Coils Coil 156 186 - -
Vivi4g02573 396 SMART Kin17_mid_2 52 178 IPR019447 -
Vivi4g02573 396 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 396 IPR037321 -
Vivi4g02573 396 FunFam DNA/RNA-binding protein KIN17, putative 340 396 - -
Vivi4g02573 396 Gene3D - 60 160 IPR038254 -
Vivi4g02573 396 FunFam DNA/RNA-binding protein kin17-like 286 339 - -
Vivi4g02573 396 Pfam KN17 SH3-like C-terminal domain 278 331 IPR041330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02573 Vivi-Chr4 124862012 124865274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02573 1 396 C2H2 Transcription Factor Family AT1G55460 70.433 0.0 584