Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02552 ATGGCTGAAATTCACACACAAACTCCAACAATCAGTCCCACAACAAGCAAACCATGCAACAACCCTCCACAACAACACAGCCTCAACTCAATGGTTCTCATAGCAGCTATAGTATGTGCTCTACTCTGTGCTCTTGGCCTCAACACAATGCTACAATGCGTGTTCCAATGCGCGAACCGCGTCCTTACCGAACCTCTCCAATGGATCGCTTCTCGGAGGCGCAACTCCGGACTCAAGAAGAAAGATAGAGTTGCTTTGCCAACATCAGTTTATAATACTCATTCAGGTGGATCATCATCAACTCCTCAAAGTTTGGATTCTAGTTGTGCTATTTGCTTAGCTGAGTTTTGTGATGGTGATAATATGAAGATGCTACCAAAGTGTAATCATCGTTTTCATGTTGGTTGTATTGATAAGTGGTTGCTTTCTCATTCTTCTTGTCCTACTTGTAGGAACATAATCAAGTCTCGTGATTCTGGACACTGCTTAAGCATTGTTATATCATAG 507 0.4241 MAEIHTQTPTISPTTSKPCNNPPQQHSLNSMVLIAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIASRRRNSGLKKKDRVALPTSVYNTHSGGSSSTPQSLDSSCAICLAEFCDGDNMKMLPKCNHRFHVGCIDKWLLSHSSCPTCRNIIKSRDSGHCLSIVIS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02552 168 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vivi4g02552 168 SUPERFAMILY RING/U-box 102 156 - -
Vivi4g02552 168 PANTHER RING-H2 FINGER PROTEIN ATL78 11 155 IPR044602 GO:0016567|GO:0016740
Vivi4g02552 168 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g02552 168 Pfam Ring finger domain 108 151 IPR001841 -
Vivi4g02552 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 156 IPR013083 -
Vivi4g02552 168 SMART ring_2 109 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02552 Vivi-Chr4 124261539 124262213 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02552 11 166 C3H Transcription Factor Family AT3G10910 35.165 2.53e-29 104