Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02543 ATGGCCAGACCGTTCGAAAATATTGCCGACATCAATGACACAAAGGATTTGTGGAAGGTGGCGGTTCGTGTGGAGCATAAATGGAGTGTTATTTCCAACAACAAAGAACACTTTGAAATGATTTTTGTCGACAAAAATGGGTGTGATATCCATGTTGTTGTACCAACGACGTATATGGCGGCATACAATGACAGATTTGCATTGGACCAGACCTATACAGTGTCGAACTTCAAAGTTGAGCGTAATAACTTGGTGTTTAAACCTTCTGGCCACGGGTTTATGGTGAAGTTTACTGGAGGAACAACTGTATCTGATGTCAACAAACATGAGATACAGCCAAAGCAACACATGTTTACGAGTTTTGTTGATATTATAACCGGGAAAACTCGGAAGGATATGCTTATTGACATTTTTGGTATTGGTGAAAGTATCGGGTATGCCCAGAGACATCGCGGAAGTAAGAAATTACAGGTTAATTTGGTCCTAAGGGATGCAACGAACAATACAATTAATTGCACCCTTTGGGAGACTTATGCTGCTCAATTCTTCAAGGTTGATGAAGAACGGGTTAATACGTCCGTTCCAATTGTTATAATGCTTCGATATGCAAAAATTAAAGAAGAAGGACAATATCCTCTTTCGGTTACAAACACCTTCCATGTTACGCAATTACATATCAACGCAGATTTGCCAGCAGTGAAGCATTTCCTTGAAAGTATACCTAAGGAGACTATGAGCGCGGTCTCTAGCCAGCTTAGCCTAAATTCACAAAACGTCTCCCGCTCCACGAATTCTGACAATTCGAGACAAACTCCTATGCAGAGATTGTTGTCTGGTGCTTTGGCTCTGCCTCTCATTGAAATAAAGAAACTGAAACAGGTCTCTTTCTGCGCTACCGTTGTTGAAACCAAAAAACTGATTGCCTCTTCCTTCGGCTGGTGTTACCGAGCATGCCATTCATGTCCTAAAGCTGCACGTGGTGATGAACCTCCTTTCATATGCGATAACAATCATAAAACGGAGGCTGAAATATGGAGGTATAAAATTGAAATAGAGGCTGTGCATAAGGGCGTACCTTGCAAATTCATATTTTGGGACTGGGAATGTACGGATCTCTTGGAAATTTCTGCTGCTCAAATGCGGGATACAATGATACAGGCTGGAATCACTGATCCTCTGGAGTTCCCATTAGCTCTTGATAAGATGCTTGACTTGGAGCTGGCTTTTAGAGTTAAGTGGCAGCCAAGCTGGGACTCATGCTCCGTTGTTATGCTCATTAAAGATAAACCCTTTGTCCAACAATTAAAGGCTCCGTGGGAACATACACAGAAGGTGTCCACTTCTCAGCCCTCCGTAACACCTCTAACGGAGCAGAAGGTGTCCACTTCTCAGCCCTCCGTAACACCTCTAACGGAGCAGATTAAAGAGAGCGTCGACGAAGCAAAAACTGATGCTGCAGAAGAGTGTGAAATTCTTACGGATGTGGAAATTACATCCAGGCATAATCCTGATCCGGTCACACCTACTGCAAAAAGGCATATTGGTGATGGCTCCAACGAATCAACTACCGTGGCTGGGATGTGTGATGGAGAGCTGTCATCAACAAAACTTAAAAAAATCATCAAGTTGGAGAAGAATATTTGA 1644 0.427 MARPFENIADINDTKDLWKVAVRVEHKWSVISNNKEHFEMIFVDKNGCDIHVVVPTTYMAAYNDRFALDQTYTVSNFKVERNNLVFKPSGHGFMVKFTGGTTVSDVNKHEIQPKQHMFTSFVDIITGKTRKDMLIDIFGIGESIGYAQRHRGSKKLQVNLVLRDATNNTINCTLWETYAAQFFKVDEERVNTSVPIVIMLRYAKIKEEGQYPLSVTNTFHVTQLHINADLPAVKHFLESIPKETMSAVSSQLSLNSQNVSRSTNSDNSRQTPMQRLLSGALALPLIEIKKLKQVSFCATVVETKKLIASSFGWCYRACHSCPKAARGDEPPFICDNNHKTEAEIWRYKIEIEAVHKGVPCKFIFWDWECTDLLEISAAQMRDTMIQAGITDPLEFPLALDKMLDLELAFRVKWQPSWDSCSVVMLIKDKPFVQQLKAPWEHTQKVSTSQPSVTPLTEQKVSTSQPSVTPLTEQIKESVDEAKTDAAEECEILTDVEITSRHNPDPVTPTAKRHIGDGSNESTTVAGMCDGELSSTKLKKIIKLEKNI 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02543 547 SUPERFAMILY Nucleic acid-binding proteins 119 244 IPR012340 -
Vivi4g02543 547 SUPERFAMILY Nucleic acid-binding proteins 4 104 IPR012340 -
Vivi4g02543 547 Gene3D - 3 105 IPR012340 -
Vivi4g02543 547 Gene3D - 260 427 IPR012340 -
Vivi4g02543 547 MobiDBLite consensus disorder prediction 499 518 - -
Vivi4g02543 547 MobiDBLite consensus disorder prediction 443 467 - -
Vivi4g02543 547 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi4g02543 547 CDD RPA1_DBD_A_like 19 103 - -
Vivi4g02543 547 Gene3D - 110 250 IPR012340 -
Vivi4g02543 547 PANTHER OS03G0429900 PROTEIN 8 498 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi4g02543 547 CDD RPA1_DBD_B_like 151 239 - -
Vivi4g02543 547 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02543 Vivi-Chr4 123601886 123604716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02543 1 343 Core DNA Replication Machinery Family AT5G08020 23.626 1.86e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02543 - - vvo:131597795 1071.23