Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02542 ATGGAGAATATTGATGAAGAGTGCAAGCATTTCTTGGAGAATAGCATGTTCCTCCAAACCCAAGAGCTTGATGGCTGGGGGTTTGATGAGGCACTTTCAGGGTACTATGATTCAAGCTCTCCAGATGGTGCAGCTTCATCTAAGAATATTGTTTCAGAAAGGAATAGAAGAAATAAACTCAATCAAAGACTCTTTGCACTTAGAGCAGTGGTCCCTAATATTAGCAAGATGGACAAGGCTTCAATTATTAAGGATGCAATTGAGTACATAGAGCACTTGCATGAACAAGAGAAGAAAATTGAAGCTGAGATAGTCGAACTTGAATCTGGGATGCCAAATAGTATTAATTCAAGTTATGATTTTGATCAGGAGCTTCCTGTGTTGCTGAGGTCCAAGAAGAAGAGAACAGATCACTTGTACGATTCTGTCAGTTCAAGAAACTATCCAATTGAACTTCTTGAGCTTAGGGTTACCTATATGGGAGATAATACAATGGTTGTAAGCTTGACATGTAGCAAAAGGACAGACACTATGGTTAAATTATGTGAAGTGTTTGAATCTTTGAACCTCAAAATCATCACTGCCAATATCACTTGTTTCTCTGGCAGGCTTCTGAAGACAGTCTTCATTCAGGCAAATGAAGAAGACAAAGATCTGTTGCAGATTAAGATCCAAACAGCCATTACAGCTCTTAATGATCCTCTAAGTCCTATGAGCATTTAA 723 0.3859 MENIDEECKHFLENSMFLQTQELDGWGFDEALSGYYDSSSPDGAASSKNIVSERNRRNKLNQRLFALRAVVPNISKMDKASIIKDAIEYIEHLHEQEKKIEAEIVELESGMPNSINSSYDFDQELPVLLRSKKKRTDHLYDSVSSRNYPIELLELRVTYMGDNTMVVSLTCSKRTDTMVKLCEVFESLNLKIITANITCFSGRLLKTVFIQANEEDKDLLQIKIQTAITALNDPLSPMSI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02542 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 44 225 - -
Vivi4g02542 240 Pfam Helix-loop-helix DNA-binding domain 51 94 IPR011598 GO:0046983
Vivi4g02542 240 SMART finulus 50 99 IPR011598 GO:0046983
Vivi4g02542 240 Coils Coil 90 110 - -
Vivi4g02542 240 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 42 111 - -
Vivi4g02542 240 Gene3D - 42 109 IPR036638 GO:0046983
Vivi4g02542 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 109 IPR036638 GO:0046983
Vivi4g02542 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02542 Vivi-Chr4 123575696 123582085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02542 1 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.977 3.09e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g02542 HLH 8.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02542 - - gmx:100817978 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02542 4 123575696 123582085 Vivi4g02542 4 123575696 123582085 ECH
Vivi4g02542 4 123575696 123582085 Vivi4g02360 4 116714143 116716926 PCT