Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02536 ATGGAAGAGGAACATAAAGGAGGTGAAGAAGTAAAATACAGGGGTGTAAGAAGAAGGCCATGGGGAAAATATGGGGCAGAGATTAGAGATCCTACAAAAGCAACTGGAAGACAATGGTTAGGAACATTTGACACAGCTGAGGAAGCTGCTAGAGCTTATGATTGTGCTGCCATTCGTTTGAGAGGTGCTCTTGCCATTCTCAATTTTCCTGATGAATTCTATCTTCATCTTTCCTCTTTATCGCGGTCGTCGTCATCGTCGTCTGCCAGTTGTTGTAGAGAGCAAAAGGAAGTAATTGAGTTTGAGTATTTGGATAACAAGGTGTTGGAAGATCTTCTTGGATCATCTAATGAAGATAATGATGATTAA 369 0.4092 MEEEHKGGEEVKYRGVRRRPWGKYGAEIRDPTKATGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDEFYLHLSSLSRSSSSSSASCCREQKEVIEFEYLDNKVLEDLLGSSNEDNDD 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02536 122 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vivi4g02536 122 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vivi4g02536 122 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Vivi4g02536 122 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Vivi4g02536 122 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Vivi4g02536 122 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Vivi4g02536 122 PANTHER DNA-BINDING DOMAIN 5 106 IPR044808 GO:0003700|GO:0009873
Vivi4g02536 122 FunFam Ethylene-responsive transcription factor 2 12 71 - -
Vivi4g02536 122 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Vivi4g02536 122 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02536 Vivi-Chr4 123497506 123498108 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02536 9 115 AP2-EREBP Transcription Factor Family AT3G23230 57.143 4.69e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi4g02536 AP2 5.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02536 - - gmx:100796977 158.688