Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02535 ATGACAAATAAAATGGAAGAGGAGCATAAGGGAGGTGAAGAAGTAAAGTACAGGGGTGTAAGGAGAAGGCCATGGGGAAAATATGGAGCAGAGATTAGAGACCCTACAAAGGCAACTGGAAGACAATGGTTAGGAACGTTTGACACAGCTGAGGAAGCTGCTAGAGCTTATGATTGTGCTGCCATTCGTTTGAGAGGTGCTCTTGCAATTCTGAACTTTCCTGATGAATACCATTTACATCTTTCTTCTTTATCGCGCTCGTCGTCATCGTCGTCGTCGTCGTCTAATGTTGCCATTGGCAGCAGTTCTTCTAGACAGCAAAATGAAATTATTGAGTTTGAGTATTTGGATAACAAGGTGTTGGAAGATCTTCTTGGATCATCGAAAGAAGAGAATGAAAGGGATGATGATTAA 414 0.4203 MTNKMEEEHKGGEEVKYRGVRRRPWGKYGAEIRDPTKATGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDEYHLHLSSLSRSSSSSSSSSNVAIGSSSSRQQNEIIEFEYLDNKVLEDLLGSSKEENERDDD 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02535 137 PANTHER DNA-BINDING DOMAIN 6 128 IPR044808 GO:0003700|GO:0009873
Vivi4g02535 137 FunFam Ethylene-responsive transcription factor 2 16 76 - -
Vivi4g02535 137 SUPERFAMILY DNA-binding domain 16 76 IPR016177 GO:0003677
Vivi4g02535 137 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Vivi4g02535 137 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Vivi4g02535 137 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Vivi4g02535 137 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Vivi4g02535 137 MobiDBLite consensus disorder prediction 84 105 - -
Vivi4g02535 137 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vivi4g02535 137 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vivi4g02535 137 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02535 Vivi-Chr4 123454589 123455082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02535 13 127 AP2-EREBP Transcription Factor Family AT3G23230 59.664 6.92e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi4g02535 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02535 - - gmx:100807295 162.155