Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02460 ATGTCAACAAGTGATTCAACCAGTGATTCAACCAGTGGTGGTGGTGGTGACGTTGGAATTATAGTTGTTATAGCCCTAGTAGTAGTTGCTGTTAAAGTAGCTATTTTTGTTTGTGTTTGTAGAAGAATAACCGAAGCAAGAGGTGGATCTAAATCCACTACTTCCATTACTCCAGATTCACAATTCATAACTCTCACAATGGATAAATTTCTAAACGACATGGAAAGGGAGAAGCCAATAAGGTTCACAGGTCAACAGCTAAGAATTGCAACAGACAACTATTCCAACTTCTTAGGATCAGGCGGATTCGGAACAGTTTACAAAGGAATTTTCAATAACGGATCGATGGTAGCCGTGAAGGTTCTCCGCGGTAGTTCTAACAAGAAAATCGACGAACAGTTTATGGCAGAAGTCGGAACAGTTGGTAGGATTCATCACTTCAATCTTGTTAGGCTATACGGATTTTGCTTTGAACGGAACTTGATCGCGCTTGTTTATGAGTACATGGGGAATGGATCACTTGACAGGTATTTGTTTCATGAGAAAAAGGTGTTGGAATTCGAAAAGCTTCATGAGATTGCAATCGGTACTGCACGAGGAATTGCTTACTTGCATGAAGAGTGTCAACATAGAATAATCCACTATGATATAAAACCGGGAAATATTCTCTTGGATAAGAATTTCTATCCAAAAGTTGCTGATTTTGGTTTGGCGAAACTTTGCAACAGAGAAAATACTCATATAACGATGACCGGAGGAAGAGGGACGCCTGGTTACGCTGCGCCCGAGCTTTGGATGCCATTTCCTATAACTCATAAATGTGATGTTTATAGTTTTGGCATGCTGTTGTTTGAAATTGTAGGTAGAAGAAGAAACCTTGAGATTGAGAATAGTGATAGCCAAGAATGGTTTCCAATTTGGGTTTGGAAAAAATTTGATGATGGACTATTAGAGGAAGCAATGATAGTTTGTGGAATAGAGGAGAAAAATAGAGAGATTGCAGAGAGAATGATTAAGGTAGCTTTAATGTGTGTTCAATATAGGCAAGAGTTAAGGCCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCATTGGAGATTCCAAAGACTTTGAACCCTTTTCAGCATTTGATTGATGGAGCTAACTTTGCTACTCAATCAGTGCAAGTGTCAAATACTTATACAACTACTGTTACTTCTTCTTCTGTTAAGGTTAGTGATTGTAGCATTGTGTGTGCTACTCCAATTATGAAGAAATATGAGATTGAATTAGCATCTAGCATAGTGTGA 1293 0.3844 MSTSDSTSDSTSGGGGDVGIIVVIALVVVAVKVAIFVCVCRRITEARGGSKSTTSITPDSQFITLTMDKFLNDMEREKPIRFTGQQLRIATDNYSNFLGSGGFGTVYKGIFNNGSMVAVKVLRGSSNKKIDEQFMAEVGTVGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFHEKKVLEFEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPGNILLDKNFYPKVADFGLAKLCNRENTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIVGRRRNLEIENSDSQEWFPIWVWKKFDDGLLEEAMIVCGIEEKNREIAERMIKVALMCVQYRQELRPIMSVVVKMLEGSLEIPKTLNPFQHLIDGANFATQSVQVSNTYTTTVTSSSVKVSDCSIVCATPIMKKYEIELASSIV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02460 430 PANTHER OS07G0415500 PROTEIN 5 374 - -
Vivi4g02460 430 CDD STKc_IRAK 98 364 - -
Vivi4g02460 430 ProSitePatterns Protein kinases ATP-binding region signature. 98 120 IPR017441 GO:0005524
Vivi4g02460 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Vivi4g02460 430 Gene3D Transferase(Phosphotransferase) domain 1 169 373 - -
Vivi4g02460 430 SMART serkin_6 92 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02460 430 Gene3D Phosphorylase Kinase; domain 1 66 168 - -
Vivi4g02460 430 Pfam Protein kinase domain 96 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02460 430 FunFam Putative receptor-like protein kinase 169 370 - -
Vivi4g02460 430 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02460 430 FunFam serine/threonine-protein kinase PBS1-like 65 168 - -
Vivi4g02460 430 SUPERFAMILY Protein kinase-like (PK-like) 75 363 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02460 Vivi-Chr4 120638621 120640393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02460 81 367 Receptor kinase-like Gene Family AT5G38280 42.517 9.05e-76 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vivi4g02460 Pkinase 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02460 - - gmx:100816921 631.713