Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02458 ATGTCAACAGCCCCTGATACTACAGCAATTGAGGTTGTTGTAGTAATAGTAGTAATTGTTGTTAAGGTAGCTATTGTGGTTTGTGTATGTAGGAGAAGACATCAAGTAAATGGTGGTGGAACCATTATTCCAGATTCACAATTCATAACTCTCACTATGGATAAATTTCTAATCGACATGGAAAGGGAGAAGCCAATAAGATTCACTGGCCAACAGCTAAGAATTGCAACAGACAACTATTCCAACTTGTTAGGATCAGGAGGATTTGGAACAGTTTACAAAGGAATTTTCAGTAACGGAACAATCGTAGCTGTGAAGGTTCTACGCGGTAGTTCCAACAAGAAAATCGACGAACAATTCATGGCAGAAGTCGGAACAATTGGTAGGATTCATCACTTTAATCTCGTTAGGCTATACGGATTTTGCTTTGAACGAAACTTGATCGCGCTTGTTTATGAATACATGGGGAATGGATCACTTGATAGGTATTTGTTTCATGAAAAAAAGGTGCTGGAATACGAAAAGCTTCATGAGATTGCGATCGGTACAGCACGAGGCATTGCTTACTTACACGAAGAGTGCCAACATAGAATAATCCACTATGATATAAAACCAGGAAATATTCTCTTAGACATGAATTTCAACGCTAAAGTTGCTGATTTCGGTTTGGCCAAACATTGCAACAGGGACAATACTCACATAACGATGACCGGAGGAAGAGGGACGCCTGGCTATGCTGCACCCGAGCTTTGGATGCCATTTCCAATAACTCACAAATGCGATGTTTATAGTTTCGGTATGCTATTATTCGAAATTGTAGGTAGAAGAAGAAACCTTGAGATTAAGAATAATGATAGCCAAGAATGGTTTCCAATTTGGGTTTGGAAAAAATTTGATGCTGGACTATTAGGGGAAGCAATGGTAGTTTGTGGAATAGAAGAGAAAAATAAAGAGATTGCTGAGAGAATGGTTAAGGTAGCTTTATGGTGTGTTCAATATAGGCCAGAGTTAAGGCCTATAATGAGTGTTGTGGTGAATATGTTAGAAGGTACATTGGAAATTCCAAAGACTTTGAACCCTTTTCAACATTTGTTTGCTGGAAATAATTTTGCTACTCAATCAGTGCAAGTGTCAAATACTTATACAACTACTGTGACTTCTTCTACCTCTTCTGTTATGGTAAGTGATTCAAGTATTGTGTGTGCTACTCCTATTATGAGGAAGTATGAGATTGAATTGGCAAATAGCATAGTGTGA 1257 0.3827 MSTAPDTTAIEVVVVIVVIVVKVAIVVCVCRRRHQVNGGGTIIPDSQFITLTMDKFLIDMEREKPIRFTGQQLRIATDNYSNLLGSGGFGTVYKGIFSNGTIVAVKVLRGSSNKKIDEQFMAEVGTIGRIHHFNLVRLYGFCFERNLIALVYEYMGNGSLDRYLFHEKKVLEYEKLHEIAIGTARGIAYLHEECQHRIIHYDIKPGNILLDMNFNAKVADFGLAKHCNRDNTHITMTGGRGTPGYAAPELWMPFPITHKCDVYSFGMLLFEIVGRRRNLEIKNNDSQEWFPIWVWKKFDAGLLGEAMVVCGIEEKNKEIAERMVKVALWCVQYRPELRPIMSVVVNMLEGTLEIPKTLNPFQHLFAGNNFATQSVQVSNTYTTTVTSSTSSVMVSDSSIVCATPIMRKYEIELANSIV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02458 418 Pfam Protein kinase domain 82 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02458 418 SMART serkin_6 78 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02458 418 FunFam Putative receptor-like protein kinase 155 356 - -
Vivi4g02458 418 ProSiteProfiles Protein kinase domain profile. 78 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02458 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Vivi4g02458 418 SUPERFAMILY Protein kinase-like (PK-like) 61 349 IPR011009 -
Vivi4g02458 418 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Vivi4g02458 418 Gene3D Phosphorylase Kinase; domain 1 54 154 - -
Vivi4g02458 418 Gene3D Transferase(Phosphotransferase) domain 1 155 359 - -
Vivi4g02458 418 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 10 357 - -
Vivi4g02458 418 FunFam serine/threonine-protein kinase PBS1-like 52 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02458 Vivi-Chr4 120616266 120617845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02458 67 383 Receptor kinase-like Gene Family AT5G38280 39.634 4.19e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vivi4g02458 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02458 - - gmx:100803355 641.343