Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02456 ATGGAGTGGGATAGTAATTCTGATCTTAGCGGTGATGAAGACGACGCCGTTTCGTCGTCGTTCCTTTTAAACGATGACGTTGGACCGCTTCCGTTTCCGGTTCTGCAAACGGCGCCGTGCGGGTTTGTTGTCACCGACGCGATCGATCCGGATCATCCTATTATATATGTCAACGCTGTTTTTGAGATGCTTACTGGTTATCGAGCTGAAGAAGTTCTCGGTCGTAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTCGCTAAGAGAAGGCATCCATTGGTGGACTCATCAGTAATTTCAGAAATTAGAAAATGCATTGACGAAGGGGTAGAGTTTCAAGGTGAGTTGCTGAACTTCAGGAAAGATGGATCTCCACTTATGAACAGACTCCGTCTGACACCTATATTTGGAGAAGATGATGAAATAACCCATGTCATTGGAATTCAGTTATTCACAGAGGCAAACATTGATCTTGGTCCTGTTCTCGGTTCTACAATTAAGGAATCTGTTAAATCATCTGGTCGGTTTCAGTCTGTGTTATCCTCACTGCAACCTCTTCCAGTGGGGGACCGGAATGTGACCCGTGGAATTTGTGGGTTATTTCAATTAAGTGACGAGGTACTGTCTCTCAAAATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTAGTTCTGTTTGTACGCGATTATATGAAGTAACAAGAAACGAAGACCTTTGGAGGATGGTATGCCAAAATGCATGGGGTAGTGAAACTACCCGTGTTTTGGAGACTGTTCCTGGTGCAAGGAGGCTTGGATGGGGTCGACTAGCAAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGGTGTTGAACCGTCACGCTGCAATTTTAGTGCTTGTGCAGTTGGGAATAGAGTTGTTCTATTTGGTGGTGAAGGTGTTAATATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATTCTAATAATCCCGAATGGCAACATGTCCAGGTTAGCTCTCCTCCCCCCGGTCGGTGGGGCCATACACTTTCTTGTGTTAATGGTTCTCGTTTAGTTGTATTTGGAGGCTGTGGAACACAGGGTTTGCTTAATGATGTGTTTGTTCTGGACTTGGATGCAACCCCTCCAACTTGGCGTGAAATTTCGGGATTAGCACCTCCACTTCCAAGATCATGGCATAGCTCTTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTTTTGAGTGATACTTTTCTCCTTGATATGTCAATGGAAAACCCTATCTGGAGGGAGATACCAGTGACATGGACACCACCTTCGCGTCTGGGCCATACACTATCTGTTTATGGTGGTAGGAAAATTCTGATGTTTGGGGGTCTGGCCAAGAGTGGTCCCCTGCGTTTCCGGTCAAGCGATGTGTTTACTATGGATTTAAGCGAGGATGAACCATGTTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGCAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCTGTTAGCCTTCCAGGTGGTAGAATTTTGATTTTTGGGGGTTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACCGATGAGAAGCCTACATGGAGAATCTTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGGGGGACAAGAGCTATTGTTCTGGGTGGTCAAACCGGGGATGAATGGATGCTAAGTGAACTGCATGAACTTTCCCTGGCAAATTCTGTCATCTAG 1839 0.4633 MEWDSNSDLSGDEDDAVSSSFLLNDDVGPLPFPVLQTAPCGFVVTDAIDPDHPIIYVNAVFEMLTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSSVISEIRKCIDEGVEFQGELLNFRKDGSPLMNRLRLTPIFGEDDEITHVIGIQLFTEANIDLGPVLGSTIKESVKSSGRFQSVLSSLQPLPVGDRNVTRGICGLFQLSDEVLSLKILARLTPRDIASVSSVCTRLYEVTRNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDATPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGDEWMLSELHELSLANSVI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02456 612 Pfam Galactose oxidase, central domain 358 407 - -
Vivi4g02456 612 Gene3D - 199 244 - -
Vivi4g02456 612 FunFam Adagio protein 1 197 244 - -
Vivi4g02456 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Vivi4g02456 612 Gene3D - 275 498 IPR015915 GO:0005515
Vivi4g02456 612 NCBIfam PAS domain S-box protein 48 148 IPR000014 -
Vivi4g02456 612 SUPERFAMILY Kelch motif 283 506 IPR015915 GO:0005515
Vivi4g02456 612 ProSiteProfiles SRCR domain profile. 214 257 IPR001190 GO:0005044|GO:0016020
Vivi4g02456 612 FunFam Putative LOV domain-containing protein 273 477 - -
Vivi4g02456 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Vivi4g02456 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Vivi4g02456 612 ProSiteProfiles PAS repeat profile. 47 109 IPR000014 -
Vivi4g02456 612 CDD PAS 38 148 IPR000014 -
Vivi4g02456 612 FunFam Putative LOV domain-containing protein 478 611 - -
Vivi4g02456 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 30 608 - -
Vivi4g02456 612 Pfam PAS domain 39 148 IPR000014 -
Vivi4g02456 612 Gene3D PAS domain 32 160 - -
Vivi4g02456 612 FunFam Adagio protein 1 32 160 - -
Vivi4g02456 612 SUPERFAMILY F-box domain 192 261 IPR036047 GO:0005515
Vivi4g02456 612 Gene3D - 499 611 IPR015915 GO:0005515
Vivi4g02456 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 149 IPR035965 -
Vivi4g02456 612 CDD F-box_AtADO-like 199 245 - -
Vivi4g02456 612 Pfam Galactose oxidase, central domain 296 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02456 Vivi-Chr4 120522689 120531553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02456 34 150 AGC Kinase Gene Family AT5G58140 39.316 2.43e-20 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02456 K12115 - gmx:100802828 1142.1